8VYG
SARS-CoV-2 S RBD (C.37 Lambda variant) plus S309 Fab, local refinement
Entity
Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
1 | A | S309 Heavy Chain | polymer | 127 | 14005.5 | 1 | Homo sapiens | ||
2 | B | S309 Light Chain | polymer | 106 | 11315.5 | 1 | Homo sapiens | ||
3 | R | Spike glycoprotein | polymer | 1270 | 140929.2 | 1 | UniProt (P0DTC2) Pfam (PF16451) Pfam (PF09408) Pfam (PF19209) Pfam (PF01601) In PDB | Severe acute respiratory syndrome coronavirus 2 | S glycoprotein,E2,Peplomer protein |
4 | R | 2-acetamido-2-deoxy-beta-D-glucopyranose | non-polymer | 221.2 | 1 | Chemie (NAG) |
Sequence modifications
R: 8 - 1208 (UniProt: P0DTC2)
PDB | External Database | Details |
---|---|---|
Val 82 | Gly 75 | conflict |
Ile 83 | Thr 76 | conflict |
- | Arg 246 | deletion |
- | Ser 247 | deletion |
- | Tyr 248 | deletion |
- | Leu 249 | deletion |
- | Thr 250 | deletion |
- | Pro 251 | deletion |
- | Gly 252 | deletion |
Asn 253 | Asp 253 | conflict |
Cys 383 | Ser 383 | conflict |
Gln 452 | Leu 452 | conflict |
Ser 490 | Phe 490 | conflict |
Gly 614 | Asp 614 | conflict |
Pro 817 | Phe 817 | conflict |
Asn 859 | Thr 859 | conflict |
Pro 892 | Ala 892 | conflict |
Pro 899 | Ala 899 | conflict |
Pro 942 | Ala 942 | conflict |
Cys 985 | Asp 985 | conflict |
Pro 986 | Lys 986 | conflict |
Pro 987 | Val 987 | conflict |
Gly 1209 | - | expression tag |
Ser 1210 | - | expression tag |
Gly 1211 | - | expression tag |
Tyr 1212 | - | expression tag |
Ile 1213 | - | expression tag |
Pro 1214 | - | expression tag |
Glu 1215 | - | expression tag |
Ala 1216 | - | expression tag |
Pro 1217 | - | expression tag |
Arg 1218 | - | expression tag |
Asp 1219 | - | expression tag |
Gly 1220 | - | expression tag |
Gln 1221 | - | expression tag |
Ala 1222 | - | expression tag |
Tyr 1223 | - | expression tag |
Val 1224 | - | expression tag |
Arg 1225 | - | expression tag |
Lys 1226 | - | expression tag |
Asp 1227 | - | expression tag |
Gly 1228 | - | expression tag |
Glu 1229 | - | expression tag |
Trp 1230 | - | expression tag |
Val 1231 | - | expression tag |
Leu 1232 | - | expression tag |
Leu 1233 | - | expression tag |
Ser 1234 | - | expression tag |
Thr 1235 | - | expression tag |
Phe 1236 | - | expression tag |
Leu 1237 | - | expression tag |
Gly 1238 | - | expression tag |
Arg 1239 | - | expression tag |
Ser 1240 | - | expression tag |
Leu 1241 | - | expression tag |
Glu 1242 | - | expression tag |
Val 1243 | - | expression tag |
Leu 1244 | - | expression tag |
Phe 1245 | - | expression tag |
Gln 1246 | - | expression tag |
Gly 1247 | - | expression tag |
Pro 1248 | - | expression tag |
Gly 1249 | - | expression tag |
Ser 1250 | - | expression tag |
Gly 1251 | - | expression tag |
Gly 1252 | - | expression tag |
Leu 1253 | - | expression tag |
Asn 1254 | - | expression tag |
Asp 1255 | - | expression tag |
Ile 1256 | - | expression tag |
Phe 1257 | - | expression tag |
Glu 1258 | - | expression tag |
Ala 1259 | - | expression tag |
Gln 1260 | - | expression tag |
Lys 1261 | - | expression tag |
Ile 1262 | - | expression tag |
Glu 1263 | - | expression tag |
Trp 1264 | - | expression tag |
His 1265 | - | expression tag |
Glu 1266 | - | expression tag |
Gly 1267 | - | expression tag |
Ser 1268 | - | expression tag |
Gly 1269 | - | expression tag |
His 1270 | - | expression tag |
His 1271 | - | expression tag |
His 1272 | - | expression tag |
His 1273 | - | expression tag |
His 1274 | - | expression tag |
His 1275 | - | expression tag |
His 1276 | - | expression tag |
His 1277 | - | expression tag |
Sequence viewer
Contents of the asymmetric unit
Polymers | Number of chains | 3 |
Total formula weight | 166250.2 | |
Non-Polymers* | Number of molecules | 1 |
Total formula weight | 221.2 | |
All* | Total formula weight | 166471.4 |