8VUP
E. coli 70S ribosome with unmodified tRNAPro(GGG) in the e*/E conformation on a slippery CCC-C codon
This is a non-PDB format compatible entry.
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A (1) | 23S ribosomal RNA | polymer | 2903 | 941305.3 | 1 | GenBank (1036415628) | Escherichia coli | |
| 2 | B (2) | 16S ribosomal RNA | polymer | 1539 | 498725.4 | 1 | GenBank (1338015391) | Escherichia coli | |
| 3 | C (3) | 5S ribosomal RNA | polymer | 120 | 38813.1 | 1 | GenBank (1370526515) | Escherichia coli | |
| 4 | D (4) | mRNA | polymer | 18 | 5700.5 | 1 | Escherichia coli | ||
| 5 | E (5) | tRNA^ProL (GGG) | polymer | 77 | 24876.8 | 1 | GenBank (1847051788) | Escherichia coli | |
| 6 | F (A) | Large ribosomal subunit protein uL1 | polymer | 223 | 23735.5 | 1 | UniProt (A0A5P0JAY3) Pfam (PF00687) | Escherichia coli | |
| 7 | G (B) | 50S ribosomal protein L2 | polymer | 271 | 29663.2 | 1 | UniProt (P60422) Pfam (PF00181) Pfam (PF03947) | Escherichia coli | Large ribosomal subunit protein uL2 |
| 8 | H (C) | 50S ribosomal protein L3 | polymer | 209 | 22277.5 | 1 | UniProt (P60438) Pfam (PF00297) | Escherichia coli | Large ribosomal subunit protein uL3 |
| 9 | I (D) | 50S ribosomal protein L4 | polymer | 201 | 22121.6 | 1 | UniProt (A1AGK6) Pfam (PF00573) | Escherichia coli | |
| 10 | J (E) | 50S ribosomal protein L5 | polymer | 177 | 20073.2 | 1 | UniProt (A0A4P8BX24) Pfam (PF00281) Pfam (PF00673) | Escherichia coli | |
| 11 | K (F) | Large ribosomal subunit protein uL6 | polymer | 176 | 18801.6 | 1 | UniProt (C3SR17) Pfam (PF00347) | Escherichia coli | |
| 12 | L (G) | Large ribosomal subunit protein bL9 | polymer | 149 | 15789.0 | 1 | UniProt (C3SFP2) Pfam (PF01281) Pfam (PF03948) | Escherichia coli | |
| 13 | M (J) | 50S ribosomal protein L13 | polymer | 142 | 16050.6 | 1 | UniProt (S1EW51) | Escherichia coli | |
| 14 | N (K) | 50S ribosomal protein L14 | polymer | 122 | 13451.9 | 1 | UniProt (S1NW45) Pfam (PF00238) | Escherichia coli | |
| 15 | O (L) | 50S ribosomal protein L15 | polymer | 143 | 14877.3 | 1 | UniProt (A0A037Y8L6) Pfam (PF00828) | Escherichia coli | |
| 16 | P (M) | 50S ribosomal protein L16 | polymer | 136 | 15312.3 | 1 | UniProt (P0ADY7) Pfam (PF00252) | Escherichia coli | Large ribosomal subunit protein uL16 |
| 17 | Q (N) | Large ribosomal subunit protein bL17 | polymer | 120 | 13721.9 | 1 | UniProt (A0A2T1LEK9) Pfam (PF01196) | Escherichia coli | |
| 18 | R (O) | 50S ribosomal protein L18 | polymer | 116 | 12663.5 | 1 | UniProt (A0A1X3KXD9) | Escherichia coli | |
| 19 | S (P) | 50S ribosomal protein L19 | polymer | 114 | 13028.1 | 1 | UniProt (S1PSA3) Pfam (PF01245) | Escherichia coli | |
| 20 | T (Q) | Large ribosomal subunit protein bL20 | polymer | 117 | 13396.8 | 1 | UniProt (C3T7Q7) Pfam (PF00453) | Escherichia coli | |
| 21 | U (R) | Ribosomal protein L21 | polymer | 103 | 11586.4 | 1 | UniProt (C3SSG2) Pfam (PF00829) | Escherichia coli | |
| 22 | V (S) | 50S ribosomal protein L22 | polymer | 110 | 12253.4 | 1 | UniProt (P61175) Pfam (PF00237) | Escherichia coli | Large ribosomal subunit protein uL22 |
| 23 | W (T) | Large ribosomal subunit protein uL23 | polymer | 93 | 10546.5 | 1 | UniProt (C3SQV2) Pfam (PF00276) | Escherichia coli | |
| 24 | X (U) | Large ribosomal subunit protein uL24 | polymer | 102 | 11078.9 | 1 | UniProt (A0A7U9LWC1) | Escherichia coli | 50S ribosomal protein L24 |
| 25 | Y (V) | 50S ribosomal protein L25 | polymer | 94 | 10713.5 | 1 | UniProt (D7XH79) | Escherichia coli | |
| 26 | Z (W) | 50S ribosomal protein L27 | polymer | 75 | 8174.4 | 1 | UniProt (A0A1X3JCC7) Pfam (PF01016) | Escherichia coli | |
| 27 | AA (X) | 50S ribosomal protein L28 | polymer | 77 | 8896.4 | 1 | UniProt (A0A0E2KZD0) Pfam (PF00830) | Escherichia coli | |
| 28 | BA (Y) | 50S ribosomal protein L29 | polymer | 63 | 7286.5 | 1 | UniProt (D6IEL0) | Escherichia coli | |
| 29 | CA (Z) | 50S ribosomal protein L30 | polymer | 58 | 6423.6 | 1 | UniProt (P0AG51) Pfam (PF00327) | Escherichia coli | Large ribosomal subunit protein uL30 |
| 30 | DA (b) | 50S ribosomal protein L32 | polymer | 56 | 6332.2 | 1 | UniProt (A0A828UBL8) Pfam (PF01783) | Escherichia coli | |
| 31 | EA (c) | 50S ribosomal protein L33 | polymer | 50 | 5814.8 | 1 | UniProt (A0A080IDV9) | Escherichia coli | |
| 32 | FA (d) | 50S ribosomal protein L34 | polymer | 46 | 5397.5 | 1 | UniProt (B7MGC4) Pfam (PF00468) | Escherichia coli | |
| 33 | GA (e) | 50S ribosomal protein L35 | polymer | 64 | 7181.8 | 1 | UniProt (A0A0E1M2J4) | Escherichia coli | |
| 34 | HA (f) | 50S ribosomal protein L36 | polymer | 38 | 4377.4 | 1 | UniProt (A0A0E2L017) Pfam (PF00444) | Escherichia coli | |
| 35 | IA (h) | Small ribosomal subunit protein uS3 | polymer | 206 | 23078.8 | 1 | UniProt (P0A7V3) Pfam (PF07650) Pfam (PF00189) | Escherichia coli | 30S ribosomal protein S3 |
| 36 | JA (i) | 30S ribosomal protein S4 | polymer | 205 | 23383.0 | 1 | UniProt (C3SR62) Pfam (PF00163) Pfam (PF01479) | Escherichia coli | |
| 37 | KA (j) | 30S ribosomal protein S5 | polymer | 157 | 16532.1 | 1 | UniProt (F4TL26) | Escherichia coli | |
| 38 | LA (k) | 30S ribosomal protein S6, non-modified isoform | polymer | 100 | 11669.4 | 1 | UniProt (P02358) Pfam (PF01250) | Escherichia coli | |
| 39 | MA (l) | 30S ribosomal protein S7 | polymer | 151 | 16861.5 | 1 | UniProt (P02359) Pfam (PF00177) | Escherichia coli | Small ribosomal subunit protein uS7 |
| 40 | NA (m) | 30S ribosomal protein S8 | polymer | 129 | 14015.4 | 1 | UniProt (A0A828U358) Pfam (PF00410) | Escherichia coli | |
| 41 | OA (n) | Small ribosomal subunit protein uS9 | polymer | 127 | 14554.9 | 1 | UniProt (C3SRY2) Pfam (PF00380) | Escherichia coli | |
| 42 | PA (o) | 30S ribosomal protein S10 | polymer | 98 | 11197.0 | 1 | UniProt (A0A0H3EQD3) Pfam (PF00338) | Escherichia coli | |
| 43 | QA (p) | Small ribosomal subunit protein uS11 | polymer | 116 | 12388.1 | 1 | UniProt (C3SR57) Pfam (PF00411) | Escherichia coli | |
| 44 | RA (q) | Small ribosomal subunit protein uS12 | polymer | 123 | 13637.0 | 1 | UniProt (C3SQR7) Pfam (PF00164) | Escherichia coli | |
| 45 | SA (r) | 30S ribosomal protein S13 | polymer | 114 | 12625.8 | 1 | UniProt (S1P5F8) Pfam (PF00416) | Escherichia coli | |
| 46 | TA (s) | Small ribosomal subunit protein uS14 | polymer | 100 | 11475.4 | 1 | UniProt (A0A8S0FJJ0) Pfam (PF00253) | Escherichia coli | |
| 47 | UA (t) | 30S ribosomal protein S15 | polymer | 88 | 10159.6 | 1 | UniProt (D7XN21) | Escherichia coli | |
| 48 | VA (u) | 30S ribosomal protein S16 | polymer | 82 | 9207.6 | 1 | UniProt (C3SYP2) Pfam (PF00886) | Escherichia coli | |
| 49 | WA (v) | 30S ribosomal protein S17 | polymer | 80 | 9263.9 | 1 | UniProt (A0A080IK26) | Escherichia coli | |
| 50 | XA (w) | 30S ribosomal protein S18 | polymer | 65 | 7606.8 | 1 | UniProt (E0J6I2) Pfam (PF01084) | Escherichia coli | |
| 51 | YA (x) | 30S ribosomal protein S19 | polymer | 79 | 9057.6 | 1 | UniProt (A0A7U9LGZ0) | Escherichia coli | |
| 52 | ZA (y) | 30S ribosomal protein S20 | polymer | 85 | 9506.2 | 1 | UniProt (C3TRH7) Pfam (PF01649) | Escherichia coli | |
| 53 | AB (z) | Small ribosomal subunit protein bS21 | polymer | 65 | 7763.1 | 1 | UniProt (P68679) Pfam (PF01165) | Escherichia coli | 30S ribosomal protein S21 |
| 54 | AC, AD, AE, AF, AG... (1, 2, 3, B, E...) | MAGNESIUM ION | non-polymer | 24.3 | 239 | Chemie (MG) | |||
| 55 | AL, BL, CL, DL, EL... (n, o, p, q, r...) | water | water | 18.0 | 552 | Chemie (HOH) |
Sequence modifications
1: 1 - 2903 (GenBank: 1036415628)
3: 1 - 120 (GenBank: 1370526515)
| PDB | External Database | Details |
|---|---|---|
| C 747 | U 1155325 | variant |
| PDB | External Database | Details |
|---|---|---|
| A 120 | U 2744652 | conflict |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 53 |
| Total formula weight | 2134431.2 | |
| Non-Polymers* | Number of molecules | 239 |
| Total formula weight | 5808.9 | |
| All* | Total formula weight | 2140240.1 |
