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8VNS

Homing endonuclease I-PpoI-DNA complex:reaction at pH6.0 (K+ MES) with 200 mM Mn2+ for 600s

Entity
Entity IDChain IDDescriptionTypeChain lengthFormula weightNumber of moleculesDB Name (Accession)Biological sourceDescriptive keywords
1A, C
(C, D)
DNA (5'-D(*TP*TP*GP*AP*CP*TP*CP*TP*CP*TP*TP*AP*A)-3')polymer133916.62synthetic construct
2B, D
(c, d)
DNA (5'-D(P*GP*AP*GP*AP*GP*TP*CP*A)-3')polymer82475.72synthetic construct
3E, F
(A, B)
Intron-encoded endonuclease I-PpoIpolymer16217680.02UniProt (Q94702)Physarum polycephalumI-Ppo
4G, I
(C, D)
MANGANESE (II) IONnon-polymer54.92Chemie (MN)
PubChem (27854)
5H, J
(C, D)
SODIUM IONnon-polymer23.02Chemie (NA)
PubChem (923)
6K, L, M, N
(A, B)
ZINC IONnon-polymer65.44Chemie (ZN)
7O, P, Q, R, S...
(C, c, D, d, A...)
waterwater18.046Chemie (HOH)
Sequence viewer
Contents of the asymmetric unit
PolymersNumber of chains6
Total formula weight48144.5
Non-Polymers*Number of molecules8
Total formula weight417.5
All*Total formula weight48562.0
*Water molecules are not included.

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PDB entries from 2026-04-08

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