8VNS
Homing endonuclease I-PpoI-DNA complex:reaction at pH6.0 (K+ MES) with 200 mM Mn2+ for 600s
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | ALS BEAMLINE 5.0.3 |
Synchrotron site | ALS |
Beamline | 5.0.3 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2023-10-25 |
Detector | DECTRIS PILATUS3 2M |
Wavelength(s) | 0.9765 |
Spacegroup name | P 31 2 1 |
Unit cell lengths | 117.905, 117.905, 84.743 |
Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
Resolution | 48.390 - 2.110 |
R-factor | 0.2238 |
Rwork | 0.222 |
R-free | 0.25230 |
Structure solution method | MOLECULAR REPLACEMENT |
RMSD bond length | 0.010 |
RMSD bond angle | 1.144 |
Data reduction software | XDS |
Data scaling software | XSCALE |
Phasing software | MOLREP |
Refinement software | PHENIX ((1.20.1_4487: ???)) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 48.390 | 48.390 | 2.240 |
High resolution limit [Å] | 2.110 | 6.280 | 2.110 |
Rmerge | 0.120 | 0.055 | 0.549 |
Rmeas | 0.135 | 0.061 | 0.613 |
Number of reflections | 75423 | 2839 | 11982 |
<I/σ(I)> | 7.91 | ||
Completeness [%] | 99.5 | ||
Redundancy | 9.7 | ||
CC(1/2) | 0.994 | 0.998 | 0.842 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 6 | 298 | 0.2 M Sodium Malonate, PEG 3350, 0.1 M MES |