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SummaryStructural detailsExperimental detailsFunctional detailsSequence NeighborHistoryDownloads

8V83

60S ribosome biogenesis intermediate (Dbp10 pre-catalytic structure - Overall map)

This is a non-PDB format compatible entry.
Entity
Entity IDChain IDDescriptionTypeChain lengthFormula weightNumber of moleculesDB Name (Accession)Biological sourceDescriptive keywords
11Saccharomyces cerevisiae S288C 25S ribosomal RNApolymer33961097493.91GenBank (2211412803)Saccharomyces cerevisiae BY4741
22Saccharomyces cerevisiae S288C 5.8S ribosomal RNApolymer15850682.91GenBank (1772891209)Saccharomyces cerevisiae BY4741
36Saccharomyces cerevisiae ITS-2polymer23274308.41Saccharomyces cerevisiae BY4741
4760S ribosomal subunit assembly/export protein LOC1polymer20423652.61UniProt (P43586)
In PDB		Saccharomyces cerevisiae BY4741Localization of ASH1 mRNA protein 1
58Ribosomal RNA-processing protein 14polymer43450599.91UniProt (P36080)
Pfam (PF15459)
Pfam (PF04935)
In PDB		Saccharomyces cerevisiae BY4741
6ARibosome biogenesis protein BRX1polymer29133585.41UniProt (Q08235)
Pfam (PF04427)
In PDB		Saccharomyces cerevisiae BY4741
7B60S ribosomal protein L3polymer38743850.81UniProt (P14126)
Pfam (PF00297)
In PDB		Saccharomyces cerevisiae BY4741Large ribosomal subunit protein uL3,Maintenance of killer protein 8,RP1,Trichodermin resistance protein,YL1
8C60S ribosomal protein L4-Apolymer36239159.11UniProt (P10664)
Pfam (PF00573)
Pfam (PF14374)
In PDB		Saccharomyces cerevisiae BY4741L2,Large ribosomal subunit protein uL4-A,RP2,YL2
9DATP-dependent RNA helicase HAS1polymer50556798.31UniProt (Q03532)
Pfam (PF00270)
Pfam (PF00271)
Pfam (PF13959)
In PDB		Saccharomyces cerevisiae BY4741Helicase associated with SET1 protein 1
10E60S ribosomal protein L6-Apolymer17620000.61UniProt (Q02326)
Pfam (PF01159)
In PDB		Saccharomyces cerevisiae BY4741L17,Large ribosomal subunit protein eL6-A,RP18,YL16
11F60S ribosomal protein L7-Apolymer24427686.31UniProt (P05737)
Pfam (PF08079)
Pfam (PF00327)
In PDB		Saccharomyces cerevisiae BY4741L6,Large ribosomal subunit protein uL30-A,RP11,YL8
12GLarge ribosomal subunit protein eL8Apolymer25628175.81UniProt (P17076)
Pfam (PF01248)
In PDB		Saccharomyces cerevisiae BY4741
13HLarge ribosomal subunit protein uL6Apolymer19121605.11UniProt (P05738)
Pfam (PF00347)
In PDB		Saccharomyces cerevisiae BY4741
14IRibosome biogenesis protein NSA1polymer46351982.51UniProt (P53136)
In PDB		Saccharomyces cerevisiae BY4741
15JrRNA-processing protein EBP2polymer42749842.61UniProt (P36049)
Pfam (PF05890)
In PDB		Saccharomyces cerevisiae BY4741EBNA1-binding protein homolog
16KProteasome-interacting protein CIC1polymer37642596.71UniProt (P38779)
Pfam (PF00687)
In PDB		Saccharomyces cerevisiae BY4741
17L60S ribosomal protein L13-Apolymer19922604.21UniProt (Q12690)
Pfam (PF01294)
In PDB		Saccharomyces cerevisiae BY4741Large ribosomal subunit protein eL13-A
18M60S ribosomal protein L14-Apolymer13815195.11UniProt (P36105)
Pfam (PF00467)
Pfam (PF01929)
In PDB		Saccharomyces cerevisiae BY4741Large ribosomal subunit protein eL14-A
19NLarge ribosomal subunit protein eL15Apolymer20424482.41UniProt (P05748)
Pfam (PF00827)
In PDB		Saccharomyces cerevisiae BY4741
20OLarge ribosomal subunit protein uL13Apolymer19922247.21UniProt (P26784)
Pfam (PF00572)
In PDB		Saccharomyces cerevisiae BY4741
21P60S ribosomal protein L17-Apolymer18420589.51UniProt (P05740)
Pfam (PF00237)
In PDB		Saccharomyces cerevisiae BY4741L20A,Large ribosomal subunit protein uL22-A,YL17
22Q60S ribosomal protein L18-Apolymer18620609.31UniProt (P0CX49)
Pfam (PF17135)
In PDB		Saccharomyces cerevisiae BY4741Large ribosomal subunit protein eL18-A,RP28
23RProtein MAK16polymer30635754.61UniProt (P10962)
Pfam (PF01778)
Pfam (PF04874)
In PDB		Saccharomyces cerevisiae BY4741
24SLarge ribosomal subunit protein eL20Apolymer17220478.91UniProt (P0CX23)
Pfam (PF01775)
In PDB		Saccharomyces cerevisiae BY4741
25TRibosomal RNA-processing protein 15polymer25028268.51UniProt (Q06511)
Pfam (PF07890)
In PDB		Saccharomyces cerevisiae BY4741
26V60S ribosomal protein L23-Apolymer13714494.01UniProt (P0CX41)
Pfam (PF00238)
In PDB		Saccharomyces cerevisiae BY4741L17a,Large ribosomal subunit protein uL14-A,YL32
27WRibosome assembly factor MRT4polymer23627098.01UniProt (P33201)
Pfam (PF00466)
Pfam (PF17777)
In PDB		Saccharomyces cerevisiae BY4741
28Y60S ribosomal protein L26-Apolymer12714265.81UniProt (P05743)
Pfam (PF16906)
Pfam (PF00467)
In PDB		Saccharomyces cerevisiae BY4741L33,Large ribosomal subunit protein uL24-A,YL33
29ZRibosome biogenesis protein SSF1polymer45351861.21UniProt (P38789)
Pfam (PF04427)
In PDB		Saccharomyces cerevisiae BY4741
30aLarge ribosomal subunit protein uL1Apolymer21724524.81UniProt (P0CX43)
Pfam (PF00687)
In PDB		Saccharomyces cerevisiae BY4741
31bNucleolar GTP-binding protein 1polymer64774531.21UniProt (Q02892)
Pfam (PF17835)
Pfam (PF06858)
Pfam (PF08155)
In PDB		Saccharomyces cerevisiae BY4741
32e60S ribosomal protein L32polymer13014809.41UniProt (P38061)
Pfam (PF01655)
In PDB		Saccharomyces cerevisiae BY4741Large ribosomal subunit protein eL32
33f60S ribosomal protein L33-Apolymer10712177.11UniProt (P05744)
Pfam (PF01247)
In PDB		Saccharomyces cerevisiae BY4741L37,Large ribosomal subunit protein eL33-A,RP47,YL37
34h60S ribosomal protein L35-Apolymer12013942.61UniProt (P0CX84)
Pfam (PF00831)
In PDB		Saccharomyces cerevisiae BY4741Large ribosomal subunit protein uL29-A
35i60S ribosomal protein L36-Apolymer10011151.31UniProt (P05745)
Pfam (PF01158)
In PDB		Saccharomyces cerevisiae BY4741L39,Large ribosomal subunit protein eL36-A,YL39
36j60S ribosomal protein L37-Apolymer889877.41UniProt (P49166)
Pfam (PF01907)
In PDB		Saccharomyces cerevisiae BY4741L43,Large ribosomal subunit protein eL37-A,YL35,YP55
37l60S ribosome subunit biogenesis protein NIP7polymer18120411.71UniProt (Q08962)
Pfam (PF17833)
Pfam (PF03657)
In PDB		Saccharomyces cerevisiae BY4741
38mRibosome biogenesis protein ERB1polymer80791830.61UniProt (Q04660)
Pfam (PF08145)
Pfam (PF00400)
In PDB		Saccharomyces cerevisiae BY4741Eukaryotic ribosome biogenesis protein 1
39nPescadillo homologpolymer60569984.11UniProt (P53261)
Pfam (PF06732)
Pfam (PF16589)
In PDB		Saccharomyces cerevisiae BY4741Nucleolar protein 7,Ribosomal RNA-processing protein 13
40oRibosome biogenesis protein 15polymer22025499.21UniProt (P53927)
Pfam (PF00076)
In PDB		Saccharomyces cerevisiae BY4741Nucleolar protein 15
41q25S rRNA (cytosine(2870)-C(5))-methyltransferasepolymer61869912.21UniProt (P40991)
Pfam (PF17125)
Pfam (PF01189)
In PDB		Saccharomyces cerevisiae BY4741Nucleolar protein 2
42rRibosome biogenesis protein NSA2polymer26129786.81UniProt (P40078)
Pfam (PF01201)
In PDB		Saccharomyces cerevisiae BY4741NOP7-associated protein 2
43tRibosome biogenesis protein RLP7polymer32236621.11UniProt (P40693)
Pfam (PF00327)
In PDB		Saccharomyces cerevisiae BY4741Ribosomal protein L7-like
44uRibosome biogenesis protein RLP24polymer19924027.71UniProt (Q07915)
Pfam (PF01246)
In PDB		Saccharomyces cerevisiae BY4741
45vNucleolar protein 16polymer23126954.41UniProt (P40007)
Pfam (PF09420)
In PDB		Saccharomyces cerevisiae BY4741
46wRibosomal RNA-processing protein 1polymer27833250.51UniProt (P35178)
Pfam (PF05997)
In PDB		Saccharomyces cerevisiae BY4741
47xRibosome production factor 1polymer29535184.41UniProt (P38805)
Pfam (PF04427)
In PDB		Saccharomyces cerevisiae BY4741
48yEukaryotic translation initiation factor 6polymer24526476.61UniProt (Q12522)
Pfam (PF01912)
In PDB		Saccharomyces cerevisiae BY4741eIF-6
49j, uZINC IONnon-polymer65.42Chemie (ZN)
Sequence viewer
Contents of the asymmetric unit
PolymersNumber of chains48
Total formula weight2680922.5
Non-Polymers*Number of molecules2
Total formula weight130.8
All*Total formula weight2681053.3
*Water molecules are not included.

221051

PDB entries from 2024-06-12

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