8V83
60S ribosome biogenesis intermediate (Dbp10 pre-catalytic structure - Overall map)
This is a non-PDB format compatible entry.
Functional Information from PROSITE/UniProt
| site_id | PS00634 |
| Number of Residues | 33 |
| Details | RIBOSOMAL_L30 Ribosomal protein L30 signature. VLqlLrLtRinSgTfvkvtkatleLLklIepYV |
| Chain | Residue | Details |
| F | VAL102-VAL134 | |
| t | ILE162-VAL194 |
| site_id | PS01105 |
| Number of Residues | 22 |
| Details | RIBOSOMAL_L35AE Ribosomal protein L35Ae signature. GKVtRtHGnsGvVrAtFrnnLP |
| Chain | Residue | Details |
| f | GLY69-PRO90 |
| site_id | PS01106 |
| Number of Residues | 18 |
| Details | RIBOSOMAL_L18E Ribosomal protein L18e signature. KaLflSKinRPpVSVsRI |
| Chain | Residue | Details |
| Q | LYS50-ILE67 |
| site_id | PS01190 |
| Number of Residues | 11 |
| Details | RIBOSOMAL_L36E Ribosomal protein L36e signature. PYERRlIDLIR |
| Chain | Residue | Details |
| i | PRO52-ARG62 |
| site_id | PS00049 |
| Number of Residues | 27 |
| Details | RIBOSOMAL_L14 Ribosomal protein L14 signature. AIVVrqakswrrr.DGvflyFedNagVI |
| Chain | Residue | Details |
| V | ALA76-ILE102 |
| site_id | PS00700 |
| Number of Residues | 22 |
| Details | RIBOSOMAL_L6_2 Ribosomal protein L6 signature 2. QicrVrnKdiRkFlDGIYVshK |
| Chain | Residue | Details |
| H | GLN163-LYS184 |
| site_id | PS00039 |
| Number of Residues | 9 |
| Details | DEAD_ATP_HELICASE DEAD-box subfamily ATP-dependent helicases signature. IIDEADRiL |
| Chain | Residue | Details |
| D | ILE194-LEU202 |
| site_id | PS01194 |
| Number of Residues | 24 |
| Details | RIBOSOMAL_L15E Ribosomal protein L15e signature. DKARrLGYkAkqGFVIYRvRVrRG |
| Chain | Residue | Details |
| N | ASP46-GLY69 |
| site_id | PS00678 |
| Number of Residues | 15 |
| Details | WD_REPEATS_1 Trp-Asp (WD) repeats signature. LATGsdDgTVRVWEI |
| Chain | Residue | Details |
| m | LEU452-ILE466 |
| site_id | PS01104 |
| Number of Residues | 15 |
| Details | RIBOSOMAL_L13E Ribosomal protein L13e signature. RaGRGFTLaEVkaaG |
| Chain | Residue | Details |
| L | ARG70-GLY84 |
| site_id | PS00579 |
| Number of Residues | 15 |
| Details | RIBOSOMAL_L29 Ribosomal protein L29 signature. SLPKIKtVRKSIACV |
| Chain | Residue | Details |
| h | SER40-VAL54 |
| site_id | PS00464 |
| Number of Residues | 25 |
| Details | RIBOSOMAL_L22 Ribosomal protein L22 signature. RrrTyRAhGRinkyesspSHIELvV |
| Chain | Residue | Details |
| P | ARG126-VAL150 |
| site_id | PS01153 |
| Number of Residues | 12 |
| Details | NOL1_NOP2_SUN NOL1/NOP2/sun family signature. FDRILlDAPCSG |
| Chain | Residue | Details |
| q | PHE415-GLY426 |
| site_id | PS01108 |
| Number of Residues | 18 |
| Details | RIBOSOMAL_L24 Ribosomal protein L24 signature. DDeVlVVrGskKGqe.GkI |
| Chain | Residue | Details |
| Y | ASP53-ILE70 |
| site_id | PS00580 |
| Number of Residues | 21 |
| Details | RIBOSOMAL_L32E Ribosomal protein L32e signature. FkRhhsdRyhRVaen..WRKqkG |
| Chain | Residue | Details |
| e | PHE17-GLY37 |
| site_id | PS01170 |
| Number of Residues | 19 |
| Details | RIBOSOMAL_L6E Ribosomal protein L6e signature. NgvPLRRvnarYVIATSt.K |
| Chain | Residue | Details |
| E | ASN72-LYS90 |
| site_id | PS01199 |
| Number of Residues | 20 |
| Details | RIBOSOMAL_L1 Ribosomal protein L1 signature. IkqVprlLGpqLSKAGkFPT |
| Chain | Residue | Details |
| a | ILE117-THR136 |
| site_id | PS00474 |
| Number of Residues | 24 |
| Details | RIBOSOMAL_L3 Ribosomal protein L3 signature. FeqnemiDaiAvTkGHGfeGvthR |
| Chain | Residue | Details |
| B | PHE209-ARG232 |
| site_id | PS00783 |
| Number of Residues | 24 |
| Details | RIBOSOMAL_L13 Ribosomal protein L13 signature. LRGMVShktarGKaalerLkVFeG |
| Chain | Residue | Details |
| O | LEU84-GLY107 |
| site_id | PS01082 |
| Number of Residues | 18 |
| Details | RIBOSOMAL_L7AE Ribosomal protein L7Ae signature. CkkmgVPYaiVkGKarLG |
| Chain | Residue | Details |
| G | CYS170-GLY187 |
| site_id | PS01077 |
| Number of Residues | 20 |
| Details | RIBOSOMAL_L37E Ribosomal protein L37e signature. GTpSfGkRhnks.HtlCnRCG |
| Chain | Residue | Details |
| j | GLY4-GLY23 |
| site_id | PS00939 |
| Number of Residues | 27 |
| Details | RIBOSOMAL_L1E Ribosomal protein L1e signature. NhneKryATaSAIaATAvaslvlaRGH |
| Chain | Residue | Details |
| C | ASN114-HIS140 |
Functional Information from SwissProt/UniProt
| site_id | SWS_FT_FI1 |
| Number of Residues | 2 |
| Details | MOD_RES: Phosphoserine; by CK1 => ECO:0000255|HAMAP-Rule:MF_03132 |
| Chain | Residue | Details |
| b | ASN288 | |
| y | SER174 | |
| y | SER175 |
| site_id | SWS_FT_FI2 |
| Number of Residues | 1 |
| Details | MOD_RES: Phosphoserine => ECO:0007744|PubMed:17330950, ECO:0007744|PubMed:19779198 |
| Chain | Residue | Details |
| y | SER231 | |
| q | ASP404 | |
| q | ASP421 | |
| q | ASP377 |
| site_id | SWS_FT_FI3 |
| Number of Residues | 1 |
| Details | MOD_RES: Phosphothreonine => ECO:0007744|PubMed:17330950, ECO:0007744|PubMed:18407956, ECO:0007744|PubMed:19779198 |
| Chain | Residue | Details |
| m | SER149 | |
| t | THR120 |
| site_id | SWS_FT_FI4 |
| Number of Residues | 1 |
| Details | MOD_RES: Phosphoserine => ECO:0007744|PubMed:17287358, ECO:0007744|PubMed:18407956 |
| Chain | Residue | Details |
| t | SER278 |
| site_id | SWS_FT_FI5 |
| Number of Residues | 2 |
| Details | CROSSLNK: Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in ubiquitin) => ECO:0007744|PubMed:22106047 |
| Chain | Residue | Details |
| B | LYS136 | |
| m | LYS127 |
