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8V1V

Human DNA Ligase I F872L bound to adenylated nicked DNA

Entity
Entity IDChain IDDescriptionTypeChain lengthFormula weightNumber of moleculesDB Name (Accession)Biological sourceDescriptive keywords
1A
(A)
DNA ligase 1polymer64771998.31UniProt (P18858)Homo sapiens (human)DNA ligase I,Polydeoxyribonucleotide synthase [ATP] 1
2B
(B)
DNA (5'-D(*GP*CP*TP*GP*AP*TP*GP*CP*GP*TP*C)-3')polymer113365.21synthetic construct
3C
(C)
DNA (5'-D(P*GP*TP*CP*GP*GP*AP*C)-3')polymer72138.41synthetic construct
4D
(D)
DNA (5'-D(*GP*TP*CP*CP*GP*AP*(OHU)P*GP*AP*CP*GP*CP*AP*TP*CP*AP*GP*C)-3')polymer185503.51synthetic construct
5E, G, H
(A)
GLYCEROLnon-polymer92.13Chemie (GOL)
6F, K
(A, D)
2-(N-MORPHOLINO)-ETHANESULFONIC ACIDnon-polymer195.22Chemie (MES)
7I
(C)
ADENOSINE MONOPHOSPHATEnon-polymer347.21Chemie (AMP)
8J
(C)
SODIUM IONnon-polymer23.01Chemie (NA)
9L, M, N, O
(A, B, C, D)
waterwater18.0237Chemie (HOH)
Sequence modifications
A: 262 - 904 (UniProt: P18858)
PDBExternal DatabaseDetails
Ser 258-expression tag
Asn 259-expression tag
Asp 260-expression tag
Met 261-expression tag
Leu 872Phe 872engineered mutation
Sequence viewer
Contents of the asymmetric unit
PolymersNumber of chains4
Total formula weight83005.4
Non-Polymers*Number of molecules7
Total formula weight1037.0
All*Total formula weight84042.4
*Water molecules are not included.

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PDB entries from 2025-07-02

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