Loading
PDBj
MenuPDBj@FacebookPDBj@X(formerly Twitter)PDBj@BlueSkyPDBj@YouTubewwPDB FoundationwwPDBDonate
RCSB PDBPDBeBMRBAdv. SearchSearch help

8V1V

Human DNA Ligase I F872L bound to adenylated nicked DNA

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsAPS BEAMLINE 22-ID
Synchrotron siteAPS
Beamline22-ID
Temperature [K]100
Detector technologyPIXEL
Collection date2021-03-12
DetectorDECTRIS EIGER X 16M
Wavelength(s)1
Spacegroup nameP 21 21 21
Unit cell lengths72.966, 96.582, 114.767
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution40.870 - 2.300
R-factor0.1814
Rwork0.179
R-free0.22340
Structure solution methodMOLECULAR REPLACEMENT
RMSD bond length0.006
RMSD bond angle0.649
Data reduction softwareHKL-2000
Data scaling softwareHKL-2000
Phasing softwarePHASER
Refinement softwarePHENIX (1.19.2_4158)
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]50.0002.340
High resolution limit [Å]2.3002.300
Rmeas0.2180.941
Number of reflections354381750
<I/σ(I)>12.75
Completeness [%]96.397.3
Redundancy5.94.4
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, HANGING DROP5.5293MES pH5.5 100mM, Lithium acetate 500mM, PEG 3350 10%

238268

PDB entries from 2025-07-02

PDB statisticsPDBj update infoContact PDBjnumon