8UW1
Cryo-EM structure of DNMT3A1 UDR in complex with H2AK119Ub-nucleosome
Entity
Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
1 | A, E | Histone H3.2 | polymer | 136 | 15421.1 | 2 | UniProt (P84233) In PDB | Xenopus laevis (African clawed frog) | Histone H3 |
2 | B, F | Histone H4 | polymer | 103 | 11394.4 | 2 | UniProt (A0A8J1LTD2) In PDB | Xenopus laevis (African clawed frog) | |
3 | C, G | Histone H2A | polymer | 130 | 14109.4 | 2 | UniProt (Q6AZJ8) In PDB | Xenopus laevis (African clawed frog) | |
4 | D, H | Histone H2B 1.1 | polymer | 126 | 13979.3 | 2 | UniProt (P02281) In PDB | Xenopus laevis (African clawed frog) | H2B1.1 |
5 | K | DNA (cytosine-5)-methyltransferase 3A | polymer | 76 | 9028.4 | 1 | UniProt (Q9Y6K1) In PDB | Homo sapiens | Dnmt3a,Cysteine methyltransferase DNMT3A,DNA methyltransferase HsaIIIA,DNA MTase HsaIIIA,M.HsaIIIA |
6 | I | DNA (146-MER) | polymer | 146 | 44824.6 | 1 | Escherichia coli 'BL21-Gold(DE3)pLysS AG' | ||
7 | J | DNA (146-MER) | polymer | 146 | 45304.9 | 1 | Escherichia coli 'BL21-Gold(DE3)pLysS AG' |
Sequence modifications
D, H: -3 - 122 (UniProt: P02281)
K: 159 - 228 (UniProt: Q9Y6K1)
PDB | External Database | Details |
---|---|---|
Thr 29 | Ser 33 | conflict |
PDB | External Database | Details |
---|---|---|
His 153 | - | expression tag |
His 154 | - | expression tag |
His 155 | - | expression tag |
His 156 | - | expression tag |
His 157 | - | expression tag |
His 158 | - | expression tag |
Sequence viewer
Contents of the asymmetric unit
Polymers | Number of chains | 11 |
Total formula weight | 208966.3 | |
All* | Total formula weight | 208966.3 |