8UUO
Prototypic SARS-CoV-2 spike (containing V417) in the open conformation
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A, B, C | Spike glycoprotein | polymer | 1211 | 134110.7 | 3 | UniProt (P0DTC2) Pfam (PF16451) Pfam (PF09408) Pfam (PF19209) Pfam (PF01601) In PDB | Severe acute respiratory syndrome coronavirus 2 | |
| 2 | E, D, F | alpha-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 383.3 | 3 | In PDB GlyTouCan (G35893LO) | |||
| 3 | A, B, C | 2-acetamido-2-deoxy-beta-D-glucopyranose | non-polymer | 221.2 | 15 | Chemie (NAG) | |||
| 4 | C | alpha-D-mannopyranose | non-polymer | 180.2 | 1 | Chemie (MAN) |
Sequence modifications
A, B, C: 1 - 1211 (UniProt: P0DTC2)
| PDB | External Database | Details |
|---|---|---|
| Val 417 | Lys 417 | conflict |
| Ala 682 | Arg 682 | conflict |
| Gly 683 | Arg 683 | conflict |
| Gly 685 | Arg 685 | conflict |
| Pro 817 | Phe 817 | conflict |
| Pro 892 | Ala 892 | conflict |
| Pro 899 | Ala 899 | conflict |
| Pro 942 | Ala 942 | conflict |
| Pro 986 | Lys 986 | conflict |
| Pro 987 | Val 987 | conflict |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 3 |
| Total formula weight | 402332.2 | |
| Branched | Number of molecules | 3 |
| Total formula weight | 1150.0 | |
| Non-Polymers* | Number of molecules | 16 |
| Total formula weight | 3498.3 | |
| All* | Total formula weight | 406980.5 |
