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8UJD

In situ human 60S ribosome with eIF6

This is a non-PDB format compatible entry.
Entity
Entity IDChain IDDescriptionTypeChain lengthFormula weightNumber of moleculesDB Name (Accession)Biological sourceDescriptive keywords
1A
(LW)
Ribosomal protein L24polymer11813761.21UniProt (A0A994J4A5)
Pfam (PF01246)
Homo sapiens (human)
2B
(L5)
28S rRNApolymer50701640222.11GenBank (NR_003287)Homo sapiens (human)
3C
(L7)
5S rRNA [Homo sapiens]polymer12038691.91GenBank (23898)Homo sapiens (human)
4D
(L8)
5.8S rRNA [Homo sapiens]polymer15650143.61GenBank (1142736641)Homo sapiens (human)
5E
(LA)
60S ribosomal protein L8polymer24826998.61UniProt (P62917)
Pfam (PF00181)
Pfam (PF03947)
Homo sapiens (human)Large ribosomal subunit protein uL2
6F
(LB)
Large ribosomal subunit protein uL3polymer40246079.91UniProt (P39023)
Pfam (PF00297)
Homo sapiens (human)
7G
(LC)
60S ribosomal protein L4polymer36841747.21UniProt (P36578)
Pfam (PF00573)
Pfam (PF14374)
Homo sapiens (human)60S ribosomal protein L1,Large ribosomal subunit protein uL4
8H
(LD)
Large ribosomal subunit protein uL18polymer29334008.31UniProt (P46777)
Pfam (PF17144)
Pfam (PF14204)
Homo sapiens (human)
9I
(LE)
60S ribosomal protein L6polymer24227763.01UniProt (A0A2K6U013)
Pfam (PF01159)
Pfam (PF03868)
Homo sapiens (human)
10J
(LF)
60S ribosomal protein L7polymer22526590.71UniProt (P18124)
Pfam (PF08079)
Pfam (PF00327)
Homo sapiens (human)Large ribosomal subunit protein uL30
11K
(LG)
60S ribosomal protein L7apolymer24127452.51UniProt (P62424)
Pfam (PF01248)
Homo sapiens (human)Large ribosomal subunit protein eL8,PLA-X polypeptide,Surfeit locus protein 3
12L
(LH)
60S ribosomal protein L9polymer19021655.31UniProt (P32969)
Pfam (PF00347)
Homo sapiens (human)Large ribosomal subunit protein uL6
13M
(LI)
Ribosomal protein uL16-likepolymer21324439.81UniProt (Q96L21)
Pfam (PF00252)
Homo sapiens (human)
14N
(LJ)
60S ribosomal protein L11polymer17620086.21UniProt (P62913)
Pfam (PF00281)
Pfam (PF00673)
Homo sapiens (human)CLL-associated antigen KW-12,Large ribosomal subunit protein uL5
15O
(LL)
Large ribosomal subunit protein eL13polymer21024190.51UniProt (P26373)
Pfam (PF01294)
Homo sapiens (human)
16P
(LM)
60S ribosomal protein L14polymer13916220.31UniProt (P50914)
Pfam (PF01929)
Homo sapiens (human)CAG-ISL 7,Large ribosomal subunit protein eL14
17Q
(LN)
60S ribosomal protein L15polymer20324076.11UniProt (P61313)
Pfam (PF00827)
Homo sapiens (human)Large ribosomal subunit protein eL15
18R
(LO)
60S ribosomal protein L13apolymer20123431.11UniProt (P40429)
Pfam (PF00572)
Homo sapiens (human)23 kDa highly basic protein,Large ribosomal subunit protein uL13
19S
(LP)
60S ribosomal protein L17polymer15317757.61UniProt (P18621)
Pfam (PF00237)
Homo sapiens (human)60S ribosomal protein L23,Large ribosomal subunit protein uL22,PD-1
20T
(LQ)
60S ribosomal protein L18polymer18721556.51UniProt (Q07020)
Pfam (PF17135)
Homo sapiens (human)Large ribosomal subunit protein eL18
21U
(LR)
60S ribosomal protein L19polymer18722441.01UniProt (P84098)
Pfam (PF01280)
Homo sapiens (human)Large ribosomal subunit protein eL19
22V
(LS)
60S ribosomal protein L18apolymer17520677.31UniProt (Q02543)
Pfam (PF01775)
Homo sapiens (human)Large ribosomal subunit protein eL20
23W
(LT)
60S ribosomal protein L21polymer15918478.81UniProt (P46778)
Pfam (PF01157)
Homo sapiens (human)Large ribosomal subunit protein eL21
24X
(LU)
Heparin-binding protein HBp15polymer10111722.51UniProt (Q7Z4W8)
Pfam (PF01776)
Homo sapiens (human)
25Y
(LV)
60S ribosomal protein L23polymer13113972.41UniProt (P62829)
Pfam (PF00238)
Homo sapiens (human)60S ribosomal protein L17,Large ribosomal subunit protein uL14
26Z
(LX)
60S ribosomal protein L23apolymer12013985.51UniProt (P62750)
Pfam (PF03939)
Pfam (PF00276)
Homo sapiens (human)Large ribosomal subunit protein uL23
27AA
(LY)
60S ribosomal protein L26polymer13415891.81UniProt (P61254)
Pfam (PF16906)
Pfam (PF00467)
Homo sapiens (human)Large ribosomal subunit protein uL24
28BA
(LZ)
60S ribosomal protein L27polymer13515704.61UniProt (P61353)
Pfam (PF00467)
Pfam (PF01777)
Homo sapiens (human)Large ribosomal subunit protein eL27
29CA
(La)
60S ribosomal protein L27apolymer14716473.31UniProt (P46776)
Pfam (PF00828)
Homo sapiens (human)Large ribosomal subunit protein uL15
30DA
(Lb)
Large ribosomal subunit protein eL29polymer12113965.81UniProt (P47914)
Pfam (PF01779)
Homo sapiens (human)
31EA
(Lc)
60S ribosomal protein L30polymer9810954.91UniProt (P62888)
Pfam (PF01248)
Homo sapiens (human)Large ribosomal subunit protein eL30
32FA
(Ld)
60S ribosomal protein L31polymer10712635.71UniProt (P62899)
Pfam (PF01198)
Homo sapiens (human)Large ribosomal subunit protein eL31
33GA
(Le)
60S ribosomal protein L32polymer12815022.01UniProt (P62910)
Pfam (PF01655)
Homo sapiens (human)Large ribosomal subunit protein eL32
34HA
(Lf)
60S ribosomal protein L35apolymer10912433.51UniProt (P18077)
Pfam (PF01247)
Homo sapiens (human)Cell growth-inhibiting gene 33 protein,Large ribosomal subunit protein eL33
35IA
(Lg)
60S ribosomal protein L34polymer11412994.61UniProt (P49207)
Pfam (PF01199)
Homo sapiens (human)Large ribosomal subunit protein eL34
36JA
(Lh)
60S ribosomal protein L35polymer12214462.41UniProt (P42766)
Pfam (PF00831)
Homo sapiens (human)Large ribosomal subunit protein uL29
37KA
(Li)
60S ribosomal protein L36polymer10211915.41UniProt (Q9Y3U8)
Pfam (PF01158)
Homo sapiens (human)Large ribosomal subunit protein eL36
38LA
(Lj)
60S ribosomal protein L37polymer8610090.91UniProt (P61927)
Pfam (PF01907)
Homo sapiens (human)G1.16,Large ribosomal subunit protein eL37
39MA
(Lk)
60S ribosomal protein L38polymer698107.81UniProt (P63173)
Pfam (PF01781)
Homo sapiens (human)Large ribosomal subunit protein eL38
40NA
(Ll)
60S ribosomal protein L39polymer506295.61UniProt (P62891)
Pfam (PF00832)
Homo sapiens (human)Large ribosomal subunit protein eL39
41OA
(Lm)
Large ribosomal subunit protein eL40polymer526199.61UniProt (P62987)
Pfam (PF01020)
Homo sapiens (human)60S ribosomal protein L40
42PA
(Lo)
60S ribosomal protein L36apolymer10512345.81UniProt (P83881)
Pfam (PF00935)
Homo sapiens (human)60S ribosomal protein L44,Cell growth-inhibiting gene 15 protein,Cell migration-inducing gene 6 protein,Large ribosomal subunit protein eL42
43QA
(Lp)
60S ribosomal protein L37apolymer9110168.21UniProt (P61513)
Pfam (PF01780)
Homo sapiens (human)Large ribosomal subunit protein eL43
44RA
(Lr)
60S ribosomal protein L28polymer12514320.81UniProt (P46779)
Pfam (PF01778)
Homo sapiens (human)Large ribosomal subunit protein eL28
45SA
(P)
Eukaryotic translation initiation factor 6polymer22524500.71UniProt (P56537)
Pfam (PF01912)
Homo sapiens (human)
46TA
(CA)
Proliferation-associated protein 2G4polymer35639718.41UniProt (Q9UQ80)
Pfam (PF00557)
Homo sapiens (human)
47AB, AC, AD, AE, AF...
(L5, L7, L8, LA, LP...)
MAGNESIUM IONnon-polymer24.3226Chemie (MG)
48MJ, NJ, OJ, PJ, QJ
(Lg, Lj, Lm, Lo, Lp)
ZINC IONnon-polymer65.45Chemie (ZN)
49RJ
(P)
waterwater18.01Chemie (HOH)
Sequence modifications
LW: 1 - 118 (UniProt: A0A994J4A5)
PDBExternal DatabaseDetails
-Ser 64deletion
-Glu 65deletion
-Glu 66deletion
-Ile 67deletion
-Gln 68deletion
-Lys 69deletion
Sequence viewer
Contents of the asymmetric unit
PolymersNumber of chains46
Total formula weight2552352.0
Non-Polymers*Number of molecules231
Total formula weight5820.0
All*Total formula weight2558171.9
*Water molecules are not included.

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PDB entries from 2025-06-11

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