8TVT
Structure of human Cysteine desulfurase Nfs1 with L-propargylglycine bound to active site PLP in complex with ISD11, Acp1 and ISCU2
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A (A) | Cysteine desulfurase | polymer | 403 | 44714.2 | 1 | UniProt (Q9Y697) Pfam (PF00266) | Homo sapiens (human) | |
| 2 | B (B) | LYR motif-containing protein 4 | polymer | 91 | 10763.5 | 1 | UniProt (Q9HD34) Pfam (PF05347) | Homo sapiens (human) | |
| 3 | C (C) | Acyl carrier protein | polymer | 76 | 8443.2 | 1 | UniProt (A7ZKJ7) Pfam (PF00550) UniProt (by SIFTS) (P0A6A8) | Escherichia coli | ACP |
| 4 | D (D) | Iron-sulfur cluster assembly enzyme ISCU | polymer | 135 | 14613.0 | 1 | UniProt (Q9H1K1) Pfam (PF01592) | Homo sapiens (human) | |
| 5 | AA, AB, DA, DB, E... (A, D, B, C) | 1,2-ETHANEDIOL | non-polymer | 62.1 | 30 | Chemie (EDO) | |||
| 6 | G (A) | PYRIDOXAL-5'-PHOSPHATE | non-polymer | 247.1 | 1 | Chemie (PLP) | |||
| 7 | H (A) | L-Propargylglycine | non-polymer | 113.1 | 1 | Chemie (LPH) | |||
| 8 | CB, I, J (D, A) | GLYCEROL | non-polymer | 92.1 | 3 | Chemie (GOL) | |||
| 9 | BA, LA, MA, PA, RA... (A, B) | DI(HYDROXYETHYL)ETHER | non-polymer | 106.1 | 8 | Chemie (PEG) | |||
| 10 | U, V (A) | TETRAETHYLENE GLYCOL | non-polymer | 194.2 | 2 | Chemie (PG4) | |||
| 11 | Y (A) | 2,5,8,11,14,17-HEXAOXANONADECAN-19-OL | non-polymer | 296.4 | 1 | Chemie (P15) | |||
| 12 | CA (A) | 2,3-DIHYDROXY-1,4-DITHIOBUTANE | non-polymer | 154.3 | 1 | Chemie (DTT) | |||
| 13 | HA (A) | TRIETHYLENE GLYCOL | non-polymer | 150.2 | 1 | Chemie (PGE) | |||
| 14 | UA (B) | {[-(BIS-CARBOXYMETHYL-AMINO)-ETHYL]-CARBOXYMETHYL-AMINO}-ACETIC ACID | non-polymer | 292.2 | 1 | Chemie (EDT) | |||
| 15 | WA (C) | S-[2-({N-[(2R)-2-hydroxy-3,3-dimethyl-4-(phosphonooxy)butanoyl]-beta-alanyl}amino)ethyl] dodecanethioate | non-polymer | 540.7 | 1 | Chemie (8Q1) | |||
| 16 | XA (C) | 2-(N-MORPHOLINO)-ETHANESULFONIC ACID | non-polymer | 195.2 | 1 | Chemie (MES) | |||
| 17 | BB (D) | PENTAETHYLENE GLYCOL | non-polymer | 238.3 | 1 | Chemie (1PE) | |||
| 18 | EB, FB, GB, HB (A, B, C, D) | water | water | 18.0 | 414 | Chemie (HOH) |
Sequence modifications
A: 56 - 454 (UniProt: Q9Y697)
B: 1 - 91 (UniProt: Q9HD34)
D: 35 - 167 (UniProt: Q9H1K1)
| PDB | External Database | Details |
|---|---|---|
| Met 52 | - | initiating methionine |
| Gly 53 | - | expression tag |
| Ser 54 | - | expression tag |
| Ser 55 | - | expression tag |
| PDB | External Database | Details |
|---|---|---|
| Ala 11 | Ser 11 | variant |
| PDB | External Database | Details |
|---|---|---|
| Met 33 | - | initiating methionine |
| Ala 34 | - | expression tag |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 4 |
| Total formula weight | 78533.8 | |
| Non-Polymers* | Number of molecules | 52 |
| Total formula weight | 5603.2 | |
| All* | Total formula weight | 84137.0 |
