8TRQ
T cell recognition of citrullinated vimentin peptide presented by HLA-DR4
Entity
Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
1 | A | HLA class II histocompatibility antigen, DR alpha chain | polymer | 189 | 21919.6 | 1 | UniProt (P01903) In PDB | Homo sapiens (human) | MHC class II antigen DRA |
2 | B | HLA class II histocompatibility antigen, DRB1 beta chain | polymer | 199 | 23206.8 | 1 | UniProt (P01911) In PDB | Homo sapiens (human) | Human leukocyte antigen DRB1,HLA-DRB1 |
3 | C | Vimentin | polymer | 13 | 1438.6 | 1 | UniProt (P08670) In PDB | Homo sapiens | |
4 | D | A07 TCR alpha chain | polymer | 209 | 22991.3 | 1 | Mus musculus (mouse) | ||
5 | E | A07 TCR beta chain | polymer | 245 | 27647.8 | 1 | Mus musculus (mouse) | ||
6 | F | 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 424.4 | 1 | In PDB GlyTouCan (G42666HT) | |||
7 | A, B, D, E | GLYCEROL | non-polymer | 92.1 | 10 | Chemie (GOL) | |||
8 | water | water | 18.0 | 37 | Chemie (HOH) |
Sequence modifications
A: 5 - 181 (UniProt: P01903)
B: 1 - 190 (UniProt: P01911)
PDB | External Database | Details |
---|---|---|
Ile 1 | - | expression tag |
Lys 2 | - | expression tag |
Glu 3 | - | expression tag |
Glu 4 | - | expression tag |
Thr 182 | - | expression tag |
Ser 183 | - | expression tag |
Gly 184 | - | expression tag |
Asp 185 | - | expression tag |
Asp 186 | - | expression tag |
Asp 187 | - | expression tag |
Asp 188 | - | expression tag |
Lys 189 | - | expression tag |
PDB | External Database | Details |
---|---|---|
Glu 9 | Trp 38 | variant |
Val 11 | Pro 40 | variant |
His 13 | Arg 42 | variant |
His 33 | Asn 62 | variant |
Tyr 37 | Ser 66 | variant |
Tyr 47 | Phe 76 | variant |
Leu 67 | Ile 96 | variant |
Lys 71 | Ala 100 | variant |
Gly 86 | Val 115 | variant |
Tyr 96 | Gln 125 | variant |
Glu 98 | Lys 127 | variant |
Ala 104 | Ser 133 | variant |
Asn 120 | Ser 149 | variant |
Arg 133 | Leu 162 | variant |
Thr 140 | Ala 169 | variant |
Val 142 | Met 171 | variant |
Leu 180 | Val 209 | variant |
Gly 191 | - | expression tag |
Ser 192 | - | expression tag |
Gly 193 | - | expression tag |
Leu 194 | - | expression tag |
Glu 195 | - | expression tag |
Val 196 | - | expression tag |
Leu 197 | - | expression tag |
Phe 198 | - | expression tag |
Gln 199 | - | expression tag |
Sequence viewer
Contents of the asymmetric unit
Polymers | Number of chains | 5 |
Total formula weight | 97204.1 | |
Branched | Number of molecules | 1 |
Total formula weight | 424.4 | |
Non-Polymers* | Number of molecules | 10 |
Total formula weight | 920.9 | |
All* | Total formula weight | 98549.4 |