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8TGO

Crystal structure of the BG505 triple tandem trimer gp140 HIV-1 Env in complex with PGT124 and 35O22

This is a non-PDB format compatible entry.
Entity
Entity IDChain IDDescriptionTypeChain lengthFormula weightNumber of moleculesDB Name (Accession)Biological sourceDescriptive keywords
1B, H, aEnvelope glycoprotein gp41polymer16417856.03UniProt (Q2N0S6)
Pfam (PF00517)
In PDB
Human immunodeficiency virus 1
2D, L, b35O22 scFvpolymer28630339.33Homo sapiens (human)
3C, P, cPGT124 light chainpolymer21423056.63Homo sapiens (human)
4G, R, eEnvelope glycoprotein gp120polymer49054164.13UniProt (Q2N0S6)
Pfam (PF00516)
In PDB
Human immunodeficiency virus 1
5O, S, fPGT124 heavy chainpolymer23525345.43Homo sapiens (human)
6Aalpha-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranosebranched910.81In PDB
GlyTouCan (G22768VO)
7X, g, h, j, l...2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranosebranched424.414In PDB
GlyTouCan (G42666HT)
8Y, Z, m, n, I...beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranosebranched586.56In PDB
GlyTouCan (G15407YE)
9i, q, Nalpha-D-mannopyranose-(1-2)-alpha-D-mannopyranose-(1-2)-alpha-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-2)-alpha-D-mannopyranose-(1-6)-[alpha-D-mannopyranose-(1-3)]alpha-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranosebranched1721.53In PDB
GlyTouCan (G40702WU)
10k, Valpha-D-mannopyranose-(1-3)-beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranosebranched748.72In PDB
GlyTouCan (G81315DD)
11H, R, a, e, B...2-acetamido-2-deoxy-beta-D-glucopyranosenon-polymer221.231Chemie (NAG)
Sequence modifications
B, H, a: 512 - 664 (UniProt: Q2N0S6)
PDBExternal DatabaseDetails
Ser 519Phe 516conflict
Pro 559Ile 556conflict
Asp 568Leu 565conflict
His 570Val 567conflict
His 585Arg 582conflict
Cys 605Thr 602conflict
Gly 665-expression tag
Ser 666-expression tag
Gly 667-expression tag
Gly 668-expression tag
Ser 669-expression tag
Gly 670-expression tag
Gly 671-expression tag
Ser 672-expression tag
Gly 673-expression tag
Ser 674-expression tag
Gly 675-expression tag
G, R, e: 31 - 507 (UniProt: Q2N0S6)
PDBExternal DatabaseDetails
Lys 64Glu 63conflict
Glu 106Thr 105conflict
Ile 271Met 270conflict
Leu 288Phe 287conflict
Val 304Arg 303conflict
Trp 316Ala 313conflict
Tyr 319Ala 316conflict
Asn 332Thr 330conflict
Lys 500Arg 497conflict
Cys 501Ala 498conflict
Gly 508-expression tag
Gly 509-expression tag
Ser 510-expression tag
Gly 511-expression tag
Gly 512-expression tag
Gly 513-expression tag
Gly 514-expression tag
Ser 515-expression tag
Gly 516-expression tag
Gly 517-expression tag
Gly 518-expression tag
Gly 519-expression tag
Ser 520-expression tag
Gly 521-expression tag
Gly 522-expression tag
Sequence viewer
Contents of the asymmetric unit
PolymersNumber of chains15
Total formula weight452284.3
BranchedNumber of molecules26
Total formula weight17033.6
Non-Polymers*Number of molecules31
Total formula weight6857.4
All*Total formula weight476175.4
*Water molecules are not included.

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PDB entries from 2024-06-12

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