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8STT

Crystal Structure of HIV-1 Reverse Transcriptase (Y181C, V106A) varient in Complex with 8-(2-(2-(2,4-dioxo-3,4-dihydropyrimidin-1(2H)-yl)ethoxy)phenoxy)indolizine-2-carbonitrile (JLJ555), a non-nucleoside inhibitor

Entity
Entity IDChain IDDescriptionTypeChain lengthFormula weightNumber of moleculesDB Name (Accession)Biological sourceDescriptive keywords
1A, C
(A, C)
Reverse transcriptase/ribonuclease Hpolymer55864014.32UniProt (P03366)
Pfam (PF00078)
Pfam (PF06817)
Pfam (PF06815)
Pfam (PF00075)
Human immunodeficiency virus type 1 BH10Exoribonuclease H,p66 RT
2B, D
(B, D)
p51 RTpolymer42850039.52UniProt (P03366)
Pfam (PF00078)
Pfam (PF06817)
Pfam (PF06815)
Human immunodeficiency virus type 1 BH10
3E, G
(A, C)
MAGNESIUM IONnon-polymer24.32Chemie (MG)
4F, H
(A, C)
8-{2-[2-(2,4-dioxo-3,4-dihydropyrimidin-1(2H)-yl)ethoxy]phenoxy}indolizine-2-carbonitrilenon-polymer388.42Chemie (29T)
5I, J, K, L
(A, B, C, D)
waterwater18.064Chemie (HOH)
Sequence modifications
A, C: 1 - 556 (UniProt: P03366)
PDBExternal DatabaseDetails
Met -1-expression tag
Val 0-expression tag
Ala 106Val 705engineered mutation
Ala 172Lys 771engineered mutation
Ala 173Lys 772engineered mutation
Cys 181Tyr 780engineered mutation
Ser 280Cys 879engineered mutation
B, D: 1 - 428 (UniProt: P03366)
PDBExternal DatabaseDetails
Ser 280Cys 879engineered mutation
Sequence viewer
Contents of the asymmetric unit
PolymersNumber of chains4
Total formula weight228107.6
Non-Polymers*Number of molecules4
Total formula weight825.4
All*Total formula weight228933.0
*Water molecules are not included.

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PDB entries from 2025-07-30

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