8STT
Crystal Structure of HIV-1 Reverse Transcriptase (Y181C, V106A) varient in Complex with 8-(2-(2-(2,4-dioxo-3,4-dihydropyrimidin-1(2H)-yl)ethoxy)phenoxy)indolizine-2-carbonitrile (JLJ555), a non-nucleoside inhibitor
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | NSLS-II BEAMLINE 17-ID-1 |
Synchrotron site | NSLS-II |
Beamline | 17-ID-1 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2022-10-19 |
Detector | DECTRIS EIGER X 9M |
Wavelength(s) | 0.9201 |
Spacegroup name | P 1 21 1 |
Unit cell lengths | 111.695, 73.006, 170.474 |
Unit cell angles | 90.00, 97.60, 90.00 |
Refinement procedure
Resolution | 54.790 - 2.620 |
R-factor | 0.2647 |
Rwork | 0.263 |
R-free | 0.29110 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 8sts |
RMSD bond length | 0.004 |
RMSD bond angle | 0.643 |
Data reduction software | XDS |
Data scaling software | XDS |
Phasing software | PHASER |
Refinement software | PHENIX ((1.20.1_4487: ???)) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 110.710 | 2.770 |
High resolution limit [Å] | 2.620 | 2.620 |
Rmerge | 0.091 | 1.503 |
Rmeas | 0.108 | 1.758 |
Rpim | 0.057 | 0.905 |
Total number of observations | 289932 | 43930 |
Number of reflections | 81572 | 11839 |
<I/σ(I)> | 5.1 | 0.6 |
Completeness [%] | 99.6 | |
Redundancy | 3.6 | 3.7 |
CC(1/2) | 0.997 | 0.401 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 6 | 277 | 50 mM MES pH 6.0, 14% PEG 8000, 100 mM ammonium sulfate, 15 mM magnesium sulfate, and 5 mM spermine |