8RGD
High pH (8.0) nitrite-bound MSOX movie series dataset 15 of the copper nitrite reductase from Bradyrhizobium sp. ORS375 (two-domain) [10.2 MGy]
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A (A) | Copper-containing nitrite reductase | polymer | 348 | 38144.0 | 1 | UniProt (H0SLX7) | Bradyrhizobium sp. ORS 375 | |
| 2 | B, C, D, E (E, F, B, G) | beta-D-fructofuranose-(2-1)-alpha-D-glucopyranose | branched | 342.3 | 4 | In PDB BIRD (PRD_900003) | |||
| 3 | F, G (A) | COPPER (II) ION | non-polymer | 63.5 | 2 | Chemie (CU) | |||
| 4 | H, I (A) | NITRITE ION | non-polymer | 46.0 | 2 | Chemie (NO2) | |||
| 5 | J, K (A) | GLYCEROL | non-polymer | 92.1 | 2 | Chemie (GOL) | |||
| 6 | L, N (A) | NITRIC OXIDE | non-polymer | 30.0 | 2 | Chemie (NO) | |||
| 7 | M (A) | CARBON DIOXIDE | non-polymer | 44.0 | 1 | Chemie (CO2) | |||
| 8 | O, P, Q, R, S... (A) | SULFATE ION | non-polymer | 96.1 | 8 | Chemie (SO4) | |||
| 9 | W (A) | water | water | 18.0 | 255 | Chemie (HOH) |
Sequence modifications
A: 2 - 341 (UniProt: H0SLX7)
| PDB | External Database | Details |
|---|---|---|
| Met 1 | - | initiating methionine |
| Glu 342 | - | expression tag |
| Asn 343 | - | expression tag |
| Leu 344 | - | expression tag |
| Tyr 345 | - | expression tag |
| Phe 346 | - | expression tag |
| Gln 347 | - | expression tag |
| Gly 348 | - | expression tag |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 1 |
| Total formula weight | 38144.0 | |
| Branched | Number of molecules | 4 |
| Total formula weight | 1369.2 | |
| Non-Polymers* | Number of molecules | 17 |
| Total formula weight | 1275.8 | |
| All* | Total formula weight | 40789.1 |
