Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

8RGD

High pH (8.0) nitrite-bound MSOX movie series dataset 15 of the copper nitrite reductase from Bradyrhizobium sp. ORS375 (two-domain) [10.2 MGy]

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsDIAMOND BEAMLINE I24
Synchrotron siteDiamond
BeamlineI24
Temperature [K]100
Detector technologyPIXEL
Collection date2023-02-15
DetectorDECTRIS PILATUS3 6M
Wavelength(s)0.775
Spacegroup nameP 21 3
Unit cell lengths107.330, 107.330, 107.330
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution30.000 - 1.710
R-factor0.15757
Rwork0.156
R-free0.18904
Structure solution methodMOLECULAR REPLACEMENT
RMSD bond length0.009
RMSD bond angle1.782
Data reduction softwarexia2
Data scaling softwareAimless
Refinement softwareREFMAC (5.8.0419)
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]48.0001.740
High resolution limit [Å]1.7101.710
Rpim0.047
Number of reflections447182338
<I/σ(I)>11.70.8
Completeness [%]100.0100
Redundancy19.8
CC(1/2)0.9990.293
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, HANGING DROP5.52930.05 M HEPES pH 5.5, 1.8 M Ammonium Sulphate

224201

PDB entries from 2024-08-28

PDB statisticsPDBj update infoContact PDBjnumon