8RCM
Escherichia coli paused disome complex (Non-rotated disome interface class 2)
This is a non-PDB format compatible entry.
Entity
Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
1 | 12 | 50S ribosomal protein L28 | polymer | 78 | 9027.6 | 1 | UniProt (P0A7M2) Pfam (PF00830) In PDB | Escherichia coli | ribosomal protein bL28 |
2 | 32 | 50S ribosomal protein L30 | polymer | 59 | 6554.8 | 1 | UniProt (P0AG51) Pfam (PF00327) In PDB | Escherichia coli | ribosomal protein uL30 |
3 | 4 | Large ribosomal subunit protein bL31A | polymer | 70 | 7887.1 | 1 | UniProt (P0A7M9) Pfam (PF01197) In PDB | Escherichia coli | 50S ribosomal protein L31 |
4 | 62 | 50S ribosomal protein L35 | polymer | 65 | 7313.0 | 1 | UniProt (P0A7Q1) Pfam (PF01632) In PDB | Escherichia coli | Ribosomal protein A, ribosomal protein bL35 |
5 | 71, 72 | 23S ribosomal RNA | polymer | 2904 | 941812.6 | 2 | Escherichia coli | ||
6 | 82 | 5S ribosomal RNA | polymer | 120 | 38790.1 | 1 | GenBank (CP035706.1) | Escherichia coli | |
7 | A1, A2 | 16S ribosomal RNA | polymer | 1542 | 499873.4 | 2 | GenBank (1388194076) | Escherichia coli | |
8 | B, B2 | Small ribosomal subunit protein uS2 | polymer | 241 | 26781.7 | 2 | UniProt (P0A7V0) Pfam (PF00318) In PDB | Escherichia coli | 30S ribosomal protein S2 |
9 | C1, C2 | Small ribosomal subunit protein uS3 | polymer | 233 | 26031.3 | 2 | UniProt (P0A7V3) Pfam (PF07650) Pfam (PF00189) In PDB | Escherichia coli | 30S ribosomal protein S3 |
10 | D1, D2 | Small ribosomal subunit protein uS4 | polymer | 206 | 23514.2 | 2 | UniProt (P0A7V8) Pfam (PF00163) Pfam (PF01479) In PDB | Escherichia coli | 30S ribosomal protein S4 |
11 | E1, E2 | Small ribosomal subunit protein uS5 | polymer | 167 | 17629.4 | 2 | UniProt (P0A7W1) Pfam (PF00333) Pfam (PF03719) In PDB | Escherichia coli | 30S ribosomal protein S5 |
12 | F1, F2 | 30S ribosomal protein S6 | polymer | 135 | 15727.5 | 2 | UniProt (P02358) Pfam (PF01250) In PDB | Escherichia coli | Small ribosomal subunit protein bS6 |
13 | G1, G2 | 30S ribosomal protein S7 | polymer | 179 | 20055.2 | 2 | UniProt (P02359) Pfam (PF00177) In PDB | Escherichia coli | Small ribosomal subunit protein uS7 |
14 | H1, H2 | Small ribosomal subunit protein uS8 | polymer | 130 | 14146.6 | 2 | UniProt (P0A7W7) Pfam (PF00410) In PDB | Escherichia coli | 30S ribosomal protein S8 |
15 | I1, I2 | Small ribosomal subunit protein uS9 | polymer | 130 | 14886.3 | 2 | UniProt (P0A7X3) Pfam (PF00380) In PDB | Escherichia coli | 30S ribosomal protein S9 |
16 | J1, J2 | 30S ribosomal protein S10 | polymer | 103 | 11755.6 | 2 | UniProt (P0A7R5) Pfam (PF00338) In PDB | Escherichia coli | Small ribosomal subunit protein uS10,Transcription termination/antitermination protein NusE |
17 | K1, K2 | Small ribosomal subunit protein uS11 | polymer | 129 | 13871.0 | 2 | UniProt (P0A7R9) Pfam (PF00411) In PDB | Escherichia coli | 30S ribosomal protein S11 |
18 | L1, L2 | Small ribosomal subunit protein uS12 | polymer | 124 | 13768.2 | 2 | UniProt (P0A7S3) Pfam (PF00164) In PDB | Escherichia coli | 30S ribosomal protein S12 |
19 | M1, M2 | Small ribosomal subunit protein uS13 | polymer | 118 | 13128.5 | 2 | UniProt (P0A7S9) Pfam (PF00416) In PDB | Escherichia coli | 30S ribosomal protein S13 |
20 | N1, N2 | Small ribosomal subunit protein uS14 | polymer | 101 | 11606.6 | 2 | UniProt (P0AG59) Pfam (PF00253) In PDB | Escherichia coli | 30S ribosomal protein S14 |
21 | O1, O2 | 30S ribosomal protein S15 | polymer | 89 | 10290.8 | 2 | UniProt (P0ADZ4) Pfam (PF00312) In PDB | Escherichia coli | Small ribosomal subunit protein uS15 |
22 | P1 | 30S ribosomal protein S16 | polymer | 82 | 9207.6 | 1 | UniProt (P0A7T3) Pfam (PF00886) In PDB | Escherichia coli | Small ribosomal subunit protein bS16 |
23 | Q1, Q2 | Small ribosomal subunit protein uS17 | polymer | 84 | 9724.5 | 2 | UniProt (P0AG63) Pfam (PF00366) In PDB | Escherichia coli | 30S ribosomal protein S17 |
24 | R1, R2 | Small ribosomal subunit protein bS18 | polymer | 75 | 9005.5 | 2 | UniProt (P0A7T7) Pfam (PF01084) In PDB | Escherichia coli | 30S ribosomal protein S18 |
25 | S1, S2 | Small ribosomal subunit protein uS19 | polymer | 92 | 10455.4 | 2 | UniProt (P0A7U3) Pfam (PF00203) In PDB | Escherichia coli | 30S ribosomal protein S19 |
26 | T1 | Small ribosomal subunit protein bS20 | polymer | 87 | 9708.5 | 1 | UniProt (P0A7U7) Pfam (PF01649) In PDB | Escherichia coli | 30S ribosomal protein S20 |
27 | U1, U2 | 30S ribosomal protein S21 | polymer | 71 | 8524.0 | 2 | UniProt (P68679) Pfam (PF01165) In PDB | Escherichia coli | Small ribosomal subunit protein bS21 |
28 | V2 | messenger RNA | polymer | 64 | 20786.5 | 1 | Escherichia coli | ||
29 | W | tRNA-Trp (P-site) | polymer | 76 | 24628.9 | 1 | Escherichia coli | ||
30 | W1 | tRNA-Phe (P-site) | polymer | 76 | 24651.9 | 1 | Escherichia coli | ||
31 | X2 | tRNA-Arg (E-site) | polymer | 77 | 24978.1 | 1 | Escherichia coli | ||
32 | Y1 | tRNA-Val (A-site) | polymer | 76 | 24617.8 | 1 | GenBank (1847302804) | Escherichia coli | |
33 | Y2 | tRNA-Ala (A-site) | polymer | 76 | 24555.7 | 1 | GenBank (1845258627) | Escherichia coli | |
34 | Z1 | 30S ribosomal protein S1 | polymer | 557 | 61238.9 | 1 | UniProt (P0AG67) Pfam (PF00575) In PDB | Escherichia coli | Bacteriophage Q beta RNA-directed RNA polymerase subunit I,Small ribosomal subunit protein bS1 |
35 | a2 | Large ribosomal subunit protein uL1 | polymer | 234 | 24765.7 | 1 | UniProt (P0A7L0) Pfam (PF00687) In PDB | Escherichia coli | 50S ribosomal protein L1 |
36 | b2 | 50S ribosomal protein L2 | polymer | 273 | 29923.6 | 1 | UniProt (P60422) Pfam (PF00181) Pfam (PF03947) In PDB | Escherichia coli | ribosomal protein uL2 |
37 | e2 | 50S ribosomal protein L5 | polymer | 179 | 20333.6 | 1 | UniProt (P62399) Pfam (PF00281) Pfam (PF00673) In PDB | Escherichia coli | ribosomal protein uL5 |
38 | g2 | 50S ribosomal protein L33 | polymer | 55 | 6388.6 | 1 | UniProt (P0A7N9) Pfam (PF00471) In PDB | Escherichia coli | ribosomal protein bL33 |
39 | h2 | 50S ribosomal protein L16 | polymer | 136 | 15312.3 | 1 | UniProt (P0ADY7) Pfam (PF00252) In PDB | Escherichia coli | ribosomal protein uL16 |
40 | i2 | 50S ribosomal protein L9 | polymer | 149 | 15789.0 | 1 | UniProt (P0A7R1) Pfam (PF01281) Pfam (PF03948) In PDB | Escherichia coli | ribosomal protein bL9 |
41 | l2 | 50S ribosomal protein L34 | polymer | 46 | 5397.5 | 1 | UniProt (P0A7P5) Pfam (PF00468) In PDB | Escherichia coli | ribosomal protein bL34 |
42 | o2 | 50S ribosomal protein L15 | polymer | 144 | 15008.5 | 1 | UniProt (P02413) Pfam (PF00828) In PDB | Escherichia coli | ribosomal protein uL15 |
43 | p | Nascent chain | polymer | 10 | 1087.2 | 1 | Escherichia coli | ||
44 | r2 | 50S ribosomal protein L18 | polymer | 117 | 12794.7 | 1 | UniProt (P0C018) Pfam (PF00861) In PDB | Escherichia coli | ribosomal protein uL18 |
45 | z2 | 50S ribosomal protein L27 | polymer | 85 | 9146.5 | 1 | UniProt (P0A7L8) Pfam (PF01016) In PDB | Escherichia coli | Large ribosomal subunit protein bL27 |
46 | 4, B | ZINC ION | non-polymer | 65.4 | 2 | Chemie (ZN) | |||
47 | 72 | 1,4-DIAMINOBUTANE | non-polymer | 88.2 | 2 | Chemie (PUT) | |||
48 | 72, A1, A2, Y2, V2... | MAGNESIUM ION | non-polymer | 24.3 | 296 | Chemie (MG) | |||
49 | Y2 | ALANINE | non-polymer | 89.1 | 1 | Chemie (ALA) |
Sequence modifications
Y1: 1 - 76 (GenBank: 1847302804)
PDB | External Database | Details |
---|---|---|
Cm0 34 | U 1288720 | variant |
Sequence viewer
Contents of the asymmetric unit
Polymers | Number of chains | 65 |
Total formula weight | 3875069.5 | |
Non-Polymers* | Number of molecules | 301 |
Total formula weight | 7590.5 | |
All* | Total formula weight | 3882660.0 |