8R1C
SD1-2 Fab in complex with SARS-CoV-2 BA.2.12.1 Spike Glycoprotein
Entity
Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
1 | A, B, C | Spike glycoprotein,Fibritin | polymer | 1285 | 142729.3 | 3 | UniProt (P0DTC2) UniProt (P10104) Pfam (PF16451) Pfam (PF09408) Pfam (PF19209) Pfam (PF01601) In PDB | Severe acute respiratory syndrome coronavirus 2 | S glycoprotein,E2,Peplomer protein,Collar protein,Whisker antigen control protein |
2 | H, D, F | SD1-2 fab heavy chain | polymer | 124 | 13274.8 | 3 | Homo sapiens | ||
3 | L, E, G | SD1-2 fab light chain | polymer | 110 | 11468.6 | 3 | Homo sapiens | ||
4 | B, C, A | 2-acetamido-2-deoxy-beta-D-glucopyranose | non-polymer | 221.2 | 30 | Chemie (NAG) |
Sequence modifications
A, B, C: 1 - 1205 (UniProt: P0DTC2)
A, B, C: 1208 - 1234 (UniProt: P10104)
PDB | External Database | Details |
---|---|---|
Ile 19 | Thr 19 | variant |
- | Leu 24 | deletion |
- | Pro 25 | deletion |
- | Pro 26 | deletion |
Ser 24 | Ala 27 | variant |
Asp 139 | Gly 142 | variant |
Gly 210 | Val 213 | variant |
Asp 336 | Gly 339 | variant |
Phe 368 | Ser 371 | variant |
Pro 370 | Ser 373 | variant |
Phe 372 | Ser 375 | variant |
Ala 373 | Thr 376 | variant |
Asn 402 | Asp 405 | variant |
Ser 405 | Arg 408 | variant |
Asn 414 | Lys 417 | variant |
Lys 437 | Asn 440 | variant |
Gln 449 | Leu 452 | variant |
Asn 474 | Ser 477 | variant |
Lys 475 | Thr 478 | variant |
Ala 481 | Glu 484 | engineered mutation |
Arg 490 | Gln 493 | variant |
Arg 495 | Gln 498 | variant |
Tyr 498 | Asn 501 | variant |
His 502 | Tyr 505 | variant |
Gly 611 | Asp 614 | variant |
Tyr 652 | His 655 | variant |
Lys 676 | Asn 679 | variant |
His 678 | Pro 681 | variant |
Leu 701 | Ser 704 | variant |
Lys 761 | Asn 764 | variant |
Tyr 793 | Asp 796 | variant |
His 951 | Gln 954 | variant |
Lys 966 | Asn 969 | variant |
Gly 1206 | - | linker |
Ser 1207 | - | linker |
PDB | External Database | Details |
---|---|---|
Leu 1229 | Phe 479 | engineered mutation |
Gly 1235 | - | expression tag |
Arg 1236 | - | expression tag |
Ser 1237 | - | expression tag |
Leu 1238 | - | expression tag |
Glu 1239 | - | expression tag |
Val 1240 | - | expression tag |
Leu 1241 | - | expression tag |
Phe 1242 | - | expression tag |
Gln 1243 | - | expression tag |
Gly 1244 | - | expression tag |
Pro 1245 | - | expression tag |
Gly 1246 | - | expression tag |
His 1247 | - | expression tag |
His 1248 | - | expression tag |
His 1249 | - | expression tag |
His 1250 | - | expression tag |
His 1251 | - | expression tag |
His 1252 | - | expression tag |
His 1253 | - | expression tag |
His 1254 | - | expression tag |
Gly 1255 | - | expression tag |
Ser 1256 | - | expression tag |
Ala 1257 | - | expression tag |
Trp 1258 | - | expression tag |
Ser 1259 | - | expression tag |
His 1260 | - | expression tag |
Pro 1261 | - | expression tag |
Gln 1262 | - | expression tag |
Phe 1263 | - | expression tag |
Glu 1264 | - | expression tag |
Lys 1265 | - | expression tag |
Gly 1266 | - | expression tag |
Gly 1267 | - | expression tag |
Gly 1268 | - | expression tag |
Ser 1269 | - | expression tag |
Gly 1270 | - | expression tag |
Gly 1271 | - | expression tag |
Gly 1272 | - | expression tag |
Ser 1273 | - | expression tag |
Gly 1274 | - | expression tag |
Gly 1275 | - | expression tag |
Ser 1276 | - | expression tag |
Ala 1277 | - | expression tag |
Trp 1278 | - | expression tag |
Ser 1279 | - | expression tag |
His 1280 | - | expression tag |
Pro 1281 | - | expression tag |
Gln 1282 | - | expression tag |
Phe 1283 | - | expression tag |
Glu 1284 | - | expression tag |
Lys 1285 | - | expression tag |
Sequence viewer
Contents of the asymmetric unit
Polymers | Number of chains | 9 |
Total formula weight | 502417.9 | |
Non-Polymers* | Number of molecules | 30 |
Total formula weight | 6636.2 | |
All* | Total formula weight | 509054.1 |