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SummaryStructural detailsExperimental detailsFunctional detailsSequence NeighborHistoryDownloads

8QSJ

Human mitoribosomal large subunit assembly intermediate 2 with GTPBP7

This is a non-PDB format compatible entry.
Entity
Entity IDChain IDDescriptionTypeChain lengthFormula weightNumber of moleculesDB Name (Accession)Biological sourceDescriptive keywords
1039S ribosomal protein L32, mitochondrialpolymer18821437.81UniProt (Q9BYC8)
Pfam (PF01783)
In PDB		Homo sapiens (human)L32mt,MRP-L32,Mitochondrial large ribosomal subunit protein bL32m
2139S ribosomal protein L33, mitochondrialpolymer657635.21UniProt (O75394)
Pfam (PF00471)
In PDB		Homo sapiens (human)L33mt,MRP-L33,Mitochondrial large ribosomal subunit protein bL33m
3239S ribosomal protein L34, mitochondrialpolymer9210183.91UniProt (Q9BQ48)
Pfam (PF00468)
In PDB		Homo sapiens (human)L34mt,MRP-L34,Mitochondrial large ribosomal subunit protein bL34m
4339S ribosomal protein L35, mitochondrialpolymer18821558.51UniProt (Q9NZE8)
Pfam (PF01632)
In PDB		Homo sapiens (human)L35mt,MRP-L35,Mitochondrial large ribosomal subunit protein bL35m
5439S ribosomal protein L36, mitochondrialpolymer10311809.31UniProt (Q9P0J6)
Pfam (PF00444)
In PDB		Homo sapiens (human)L36mt,MRP-L36,BRCA1-interacting protein 1,Mitochondrial large ribosomal subunit protein bL36m
6539S ribosomal protein L37, mitochondrialpolymer42348183.31UniProt (Q9BZE1)
Pfam (PF07147)
In PDB		Homo sapiens (human)L37mt,MRP-L37,39S ribosomal protein L2,mitochondrial,L2mt,MRP-L2,Mitochondrial large ribosomal subunit protein mL37
7639S ribosomal protein L38, mitochondrialpolymer38044659.41UniProt (Q96DV4)
Pfam (PF01161)
In PDB		Homo sapiens (human)L38mt,MRP-L38,Mitochondrial large ribosomal subunit protein mL38
8739S ribosomal protein L39, mitochondrialpolymer33838764.81UniProt (Q9NYK5)
In PDB		Homo sapiens (human)L39mt,MRP-L39,39S ribosomal protein L5,mitochondrial,L5mt,MRP-L5,Mitochondrial large ribosomal subunit protein mL39
9839S ribosomal protein L40, mitochondrialpolymer20624534.41UniProt (Q9NQ50)
Pfam (PF09812)
In PDB		Homo sapiens (human)L40mt,MRP-L40,Mitochondrial large ribosomal subunit protein mL40,Nuclear localization signal-containing protein deleted in velocardiofacial syndrome,Up-regulated in metastasis
10939S ribosomal protein L41, mitochondrialpolymer13715404.71UniProt (Q8IXM3)
Pfam (PF09809)
In PDB		Homo sapiens (human)L41mt,MRP-L41,39S ribosomal protein L27 homolog,Bcl-2-interacting mitochondrial ribosomal protein L41,Cell proliferation-inducing gene 3 protein,MRP-L27 homolog,Mitochondrial large ribosomal subunit protein mL41
11A16S rRNApolymer1603512186.11GenBank (1530720620)Homo sapiens (human)
12BtRNA-Valpolymer7222961.71GenBank (1896813692)Homo sapiens (human)
13D39S ribosomal protein L2, mitochondrialpolymer30533355.91UniProt (Q5T653)
Pfam (PF00181)
Pfam (PF03947)
In PDB		Homo sapiens (human)L2mt,MRP-L2,Mitochondrial large ribosomal subunit protein uL2m
14E39S ribosomal protein L3, mitochondrialpolymer34838689.61UniProt (P09001)
Pfam (PF00297)
In PDB		Homo sapiens (human)L3mt,MRP-L3,Mitochondrial large ribosomal subunit protein uL3m
15F39S ribosomal protein L4, mitochondrialpolymer31134970.21UniProt (Q9BYD3)
Pfam (PF00573)
In PDB		Homo sapiens (human)L4mt,MRP-L4,Mitochondrial large ribosomal subunit protein uL4m
16H39S ribosomal protein L9, mitochondrialpolymer26730296.41UniProt (Q9BYD2)
Pfam (PF01281)
Pfam (PF22078)
In PDB		Homo sapiens (human)L9mt,MRP-L9,Mitochondrial large ribosomal subunit protein bL9m
17I39S ribosomal protein L10, mitochondrialpolymer26129322.51UniProt (Q7Z7H8)
Pfam (PF00466)
In PDB		Homo sapiens (human)L10mt,MRP-L10,39S ribosomal protein L8,mitochondrial,L8mt,MRP-L8,Mitochondrial large ribosomal subunit protein uL10m
18J39S ribosomal protein L11, mitochondrialpolymer19220716.21UniProt (Q9Y3B7)
Pfam (PF03946)
Pfam (PF00298)
In PDB		Homo sapiens (human)L11mt,MRP-L11,Mitochondrial large ribosomal subunit protein uL11m
19K39S ribosomal protein L13, mitochondrialpolymer17820765.01UniProt (Q9BYD1)
Pfam (PF00572)
In PDB		Homo sapiens (human)L13mt,MRP-L13,Mitochondrial large ribosomal subunit protein uL13m
20L39S ribosomal protein L14, mitochondrialpolymer14515973.71UniProt (Q6P1L8)
Pfam (PF00238)
In PDB		Homo sapiens (human)L14mt,MRP-L14,39S ribosomal protein L32,mitochondrial,L32mt,MRP-L32,Mitochondrial large ribosomal subunit protein uL14m
21M39S ribosomal protein L15, mitochondrialpolymer29633473.81UniProt (Q9P015)
Pfam (PF00828)
In PDB		Homo sapiens (human)L15mt,MRP-L15,Mitochondrial large ribosomal subunit protein uL15m
22N39S ribosomal protein L16, mitochondrialpolymer25128496.31UniProt (Q9NX20)
Pfam (PF00252)
In PDB		Homo sapiens (human)L16mt,MRP-L16,Mitochondrial large ribosomal subunit protein uL16m
23O39S ribosomal protein L17, mitochondrialpolymer17520083.31UniProt (Q9NRX2)
Pfam (PF01196)
In PDB		Homo sapiens (human)L17mt,MRP-L17,LYST-interacting protein 2,Mitochondrial large ribosomal subunit protein bL17m
24P39S ribosomal protein L18, mitochondrialpolymer18020607.61UniProt (Q9H0U6)
Pfam (PF00861)
In PDB		Homo sapiens (human)L18mt,MRP-L18,Mitochondrial large ribosomal subunit protein uL18m
25Q39S ribosomal protein L19, mitochondrialpolymer29233585.01UniProt (P49406)
Pfam (PF01245)
In PDB		Homo sapiens (human)L19mt,MRP-L19,39S ribosomal protein L15,mitochondrial,L15mt,MRP-L15,Mitochondrial large ribosomal subunit protein bL19m
26R39S ribosomal protein L20, mitochondrialpolymer14917479.71UniProt (Q9BYC9)
Pfam (PF00453)
In PDB		Homo sapiens (human)L20mt,MRP-L20,Mitochondrial large ribosomal subunit protein bL20m
27S39S ribosomal protein L21, mitochondrialpolymer20522847.71UniProt (Q7Z2W9)
Pfam (PF00829)
In PDB		Homo sapiens (human)L21mt,MRP-L21,Mitochondrial large ribosomal subunit protein bL21m
28T39S ribosomal protein L22, mitochondrialpolymer20623683.71UniProt (Q9NWU5)
Pfam (PF00237)
In PDB		Homo sapiens (human)L22mt,MRP-L22,39S ribosomal protein L25,mitochondrial,L25mt,MRP-L25,Mitochondrial large ribosomal subunit protein uL22m
29U39S ribosomal protein L23, mitochondrialpolymer15317849.21UniProt (Q16540)
Pfam (PF00276)
In PDB		Homo sapiens (human)L23mt,MRP-L23,L23 mitochondrial-related protein,Mitochondrial large ribosomal subunit protein uL23m,Ribosomal protein L23-like
30V39S ribosomal protein L24, mitochondrialpolymer21624953.91UniProt (Q96A35)
Pfam (PF00467)
Pfam (PF17136)
In PDB		Homo sapiens (human)L24mt,MRP-L24,Mitochondrial large ribosomal subunit protein uL24m
31W39S ribosomal protein L27, mitochondrialpolymer14816102.91UniProt (Q9P0M9)
Pfam (PF01016)
In PDB		Homo sapiens (human)L27mt,MRP-L27,Mitochondrial large ribosomal subunit protein bL27m
32X39S ribosomal protein L28, mitochondrialpolymer25630202.91UniProt (Q13084)
Pfam (PF00830)
In PDB		Homo sapiens (human)L28mt,MRP-L28,Melanoma antigen p15,Melanoma-associated antigen recognized by T-lymphocytes,Mitochondrial large ribosomal subunit protein bL28m
33Y39S ribosomal protein L47, mitochondrialpolymer25029508.51UniProt (Q9HD33)
Pfam (PF06984)
In PDB		Homo sapiens (human)L47mt,MRP-L47,Mitochondrial large ribosomal subunit protein uL29m,Nasopharyngeal carcinoma metastasis-related protein 1
34Z39S ribosomal protein L30, mitochondrialpolymer16118582.81UniProt (Q8TCC3)
Pfam (PF00327)
In PDB		Homo sapiens (human)L30mt,MRP-L30,39S ribosomal protein L28,mitochondrial,L28mt,MRP-L28,Mitochondrial large ribosomal subunit protein uL30m
35a39S ribosomal protein L42, mitochondrialpolymer14216691.21UniProt (Q9Y6G3)
Pfam (PF10210)
In PDB		Homo sapiens (human)L42mt,MRP-L42,39S ribosomal protein L31,mitochondrial,L31mt,MRP-L31,Mitochondrial large ribosomal subunit protein mL42
36bLarge ribosomal subunit protein mL43polymer21523352.61UniProt (Q8N983)
Pfam (PF05047)
In PDB		Homo sapiens (human)39S ribosomal protein L43,mitochondrial,L43mt,MRP-L43,Mitochondrial ribosomal protein bMRP36a
37c39S ribosomal protein L44, mitochondrialpolymer33237583.31UniProt (Q9H9J2)
Pfam (PF22935)
Pfam (PF22892)
In PDB		Homo sapiens (human)L44mt,MRP-L44,Mitochondrial large ribosomal subunit protein mL44
38d39S ribosomal protein L45, mitochondrialpolymer30635402.91UniProt (Q9BRJ2)
Pfam (PF04280)
In PDB		Homo sapiens (human)L45mt,MRP-L45,Mitochondrial large ribosomal subunit protein mL45
39e39S ribosomal protein L46, mitochondrialpolymer27931748.11UniProt (Q9H2W6)
Pfam (PF11788)
In PDB		Homo sapiens (human)L46mt,MRP-L46,Mitochondrial large ribosomal subunit protein mL46,P2ECSL
40f39S ribosomal protein L48, mitochondrialpolymer21223970.81UniProt (Q96GC5)
Pfam (PF00338)
In PDB		Homo sapiens (human)L48mt,MRP-L48,Mitochondrial large ribosomal subunit protein mL48
41g39S ribosomal protein L49, mitochondrialpolymer16619225.01UniProt (Q13405)
Pfam (PF05046)
In PDB		Homo sapiens (human)L49mt,MRP-L49,Mitochondrial large ribosomal subunit protein mL49,Neighbor of FAU,NOF,Protein NOF1
42h39S ribosomal protein L50, mitochondrialpolymer15818349.91UniProt (Q8N5N7)
Pfam (PF10501)
In PDB		Homo sapiens (human)L50mt,MRP-L50,Mitochondrial large ribosomal subunit protein mL50
43i39S ribosomal protein L51, mitochondrialpolymer12815125.91UniProt (Q4U2R6)
Pfam (PF10244)
In PDB		Homo sapiens (human)L51mt,MRP-L51,Mitochondrial large ribosomal subunit protein mL51,bMRP-64,bMRP64
44j39S ribosomal protein L52, mitochondrialpolymer12313682.71UniProt (Q86TS9)
Pfam (PF18699)
In PDB		Homo sapiens (human)L52mt,MRP-L52,Mitochondrial large ribosomal subunit protein mL52
45k39S ribosomal protein L53, mitochondrialpolymer11212125.91UniProt (Q96EL3)
Pfam (PF10780)
In PDB		Homo sapiens (human)MRP-L53,Mitochondrial large ribosomal subunit protein mL53
46l39S ribosomal protein L54, mitochondrialpolymer13815844.21UniProt (Q6P161)
Pfam (PF08561)
In PDB		Homo sapiens (human)L54mt,MRP-L54,Mitochondrial large ribosomal subunit protein mL54
47m39S ribosomal protein L55, mitochondrialpolymer12815160.41UniProt (Q7Z7F7)
Pfam (PF09776)
In PDB		Homo sapiens (human)L55mt,MRP-L55,Mitochondrial large ribosomal subunit protein bL31m,Mitochondrial large ribosomal subunit protein mL55
48oRibosomal protein 63, mitochondrialpolymer10212292.31UniProt (Q9BQC6)
Pfam (PF14978)
In PDB		Homo sapiens (human)hMRP63,Mitochondrial large ribosomal subunit protein mL63,Mitochondrial ribosomal protein 63,Mitochondrial ribosomal protein L57
49pPeptidyl-tRNA hydrolase ICT1, mitochondrialpolymer20623674.21UniProt (Q14197)
Pfam (PF00472)
In PDB		Homo sapiens (human)39S ribosomal protein L58,mitochondrial,MRP-L58,Digestion substraction 1,DS-1,Immature colon carcinoma transcript 1 protein,Mitochondrial large ribosomal subunit protein mL62
50qGrowth arrest and DNA damage-inducible proteins-interacting protein 1polymer22225426.91UniProt (Q8TAE8)
Pfam (PF10147)
In PDB		Homo sapiens (human)39S ribosomal protein L59,mitochondrial,MRP-L59,CKII beta-associating protein,CR6-interacting factor 1,CRIF1,Mitochondrial large ribosomal subunit protein mL64,Papillomavirus L2-interacting nuclear protein 1,PLINP,PLINP-1,p53-responsive gene 6 protein
51r39S ribosomal protein S18a, mitochondrialpolymer19622224.11UniProt (Q9NVS2)
Pfam (PF01084)
In PDB		Homo sapiens (human)MRP-S18-a,Mrps18a,S18mt-a,39S ribosomal protein S18-3,mitochondrial,MRP-S18-3,Mitochondrial large ribosomal subunit protein bS18a,Mitochondrial large ribosomal subunit protein mL66
52s39S ribosomal protein S30, mitochondrialpolymer43950429.61UniProt (Q9NP92)
Pfam (PF07147)
In PDB		Homo sapiens (human)MRP-S30,S30mt,Mitochondrial large ribosomal subunit protein mL65,Mitochondrial large ribosomal subunit protein mS30,Programmed cell death protein 9
53uMitochondrial assembly of ribosomal large subunit protein 1polymer23426203.11UniProt (Q96EH3)
Pfam (PF02410)
In PDB		Homo sapiens (human)
54vMIEF1 upstream open reading frame proteinpolymer708460.81UniProt (L0R8F8)
Pfam (PF05347)
In PDB		Homo sapiens (human)
55wAcyl carrier protein, mitochondrialpolymer15617434.31UniProt (O14561)
Pfam (PF00550)
In PDB		Homo sapiens (human)ACP,CI-SDAP,NADH-ubiquinone oxidoreductase 9.6 kDa subunit
56x5-methylcytosine rRNA methyltransferase NSUN4polymer38443140.51UniProt (Q96CB9)
Pfam (PF01189)
In PDB		Homo sapiens (human)NOL1/NOP2/Sun domain family member 4
57yTranscription termination factor 4, mitochondrialpolymer38144012.51UniProt (Q7Z6M4)
Pfam (PF02536)
In PDB		Homo sapiens (human)Mitochondrial transcription termination factor 4,mTERF domain-containing protein 2
58zMitochondrial ribosome-associated GTPase 1polymer33437292.71UniProt (Q9BT17)
Pfam (PF01926)
In PDB		Homo sapiens (human)GTP-binding protein 7,Mitochondrial GTPase 1
590, 4ZINC IONnon-polymer65.42Chemie (ZN)
60A, M, g, zMAGNESIUM IONnon-polymer24.338Chemie (MG)
61rFE2/S2 (INORGANIC) CLUSTERnon-polymer175.81Chemie (FES)
62wS-(2-{[N-(2-HYDROXY-4-{[HYDROXY(OXIDO)PHOSPHINO]OXY}-3,3-DIMETHYLBUTANOYL)-BETA-ALANYL]AMINO}ETHYL) DECANETHIOATEnon-polymer496.61Chemie (PM8)
63xS-ADENOSYLMETHIONINEnon-polymer398.41Chemie (SAM)
64zPHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTERnon-polymer522.21Chemie (GNP)
Sequence modifications
A: 1671 - 3228 (GenBank: 1530720620)
A: 4995 - 6007 (PDB: 8QSJ)
b: 2 - 215 (UniProt: Q8N983)
PDBExternal DatabaseDetails
Ace 2-acetylation
Sequence viewer
Contents of the asymmetric unit
PolymersNumber of chains58
Total formula weight1929719.8
Non-Polymers*Number of molecules44
Total formula weight2647.5
All*Total formula weight1932367.2
*Water molecules are not included.

224572

PDB entries from 2024-09-04

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