8QH1
Crystal structure of the SARS-CoV-2 RBD from the Omicron BA4 variant with the antibody Cv2.3194
Entity
Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
1 | E | Spike glycoprotein | polymer | 243 | 27508.8 | 1 | UniProt (A0A8A5XRG7) Pfam (PF09408) In PDB | Severe acute respiratory syndrome coronavirus 2 | |
2 | H | Cv2.3194 heavy chain | polymer | 229 | 24379.3 | 1 | Homo sapiens | ||
3 | L | IGK@ protein | polymer | 211 | 22810.3 | 1 | UniProt (Q6PJF2) Pfam (PF07686) Pfam (PF07654) In PDB | Homo sapiens (human) | |
4 | E | 2-acetamido-2-deoxy-beta-D-glucopyranose | non-polymer | 221.2 | 1 | Chemie (NAG) | |||
5 | water | water | 18.0 | 8 | Chemie (HOH) |
Sequence modifications
E: 331 - 530 (UniProt: A0A8A5XRG7)
L: 1 - 211 (UniProt: Q6PJF2)
PDB | External Database | Details |
---|---|---|
Asp 339 | Gly 336 | conflict |
Phe 371 | Ser 368 | conflict |
Pro 373 | Ser 370 | conflict |
Phe 375 | Ser 372 | conflict |
Ala 376 | Thr 373 | conflict |
Asn 405 | Asp 402 | conflict |
Ser 408 | Arg 405 | conflict |
Lys 440 | Asn 437 | conflict |
Arg 452 | Leu 449 | conflict |
Asn 477 | Ser 474 | conflict |
Lys 478 | Thr 475 | conflict |
Ala 484 | Lys 481 | conflict |
Val 486 | Phe 483 | conflict |
Arg 498 | Gln 495 | conflict |
His 505 | Tyr 502 | conflict |
Gly 529 | Lys 526 | conflict |
Gly 531 | - | expression tag |
Leu 532 | - | expression tag |
Val 533 | - | expression tag |
Pro 534 | - | expression tag |
Arg 535 | - | expression tag |
Gly 536 | - | expression tag |
Ser 537 | - | expression tag |
His 538 | - | expression tag |
His 539 | - | expression tag |
His 540 | - | expression tag |
His 541 | - | expression tag |
His 542 | - | expression tag |
His 543 | - | expression tag |
His 544 | - | expression tag |
His 545 | - | expression tag |
Ser 546 | - | expression tag |
Ala 547 | - | expression tag |
Trp 548 | - | expression tag |
Ser 549 | - | expression tag |
His 550 | - | expression tag |
Pro 551 | - | expression tag |
Gln 552 | - | expression tag |
Phe 553 | - | expression tag |
Glu 554 | - | expression tag |
Lys 555 | - | expression tag |
Gly 556 | - | expression tag |
Thr 557 | - | expression tag |
Gly 558 | - | expression tag |
Gly 559 | - | expression tag |
Leu 560 | - | expression tag |
Asn 561 | - | expression tag |
Asp 562 | - | expression tag |
Ile 563 | - | expression tag |
Phe 564 | - | expression tag |
Glu 565 | - | expression tag |
Ala 566 | - | expression tag |
Gln 567 | - | expression tag |
Lys 568 | - | expression tag |
Ile 569 | - | expression tag |
Glu 570 | - | expression tag |
Trp 571 | - | expression tag |
His 572 | - | expression tag |
Glu 573 | - | expression tag |
PDB | External Database | Details |
---|---|---|
Gly 9 | Ala 29 | conflict |
Ser 28 | Ile 48 | conflict |
Ser 32 | Ala 52 | conflict |
Ile 49 | Met 69 | conflict |
Tyr 50 | Phe 70 | conflict |
Ala 52 | Ser 72 | conflict |
Gly 61 | Asp 81 | conflict |
Ile 86 | Val 106 | conflict |
- | Tyr 112 | deletion |
- | Gly 113 | deletion |
- | Ser 114 | deletion |
- | Ser 115 | deletion |
Gly 92 | Gln 116 | conflict |
Val 93 | Gly 117 | conflict |
Gly 97 | Pro 121 | conflict |
Glu 102 | Asp 126 | conflict |
Sequence viewer
Contents of the asymmetric unit
Polymers | Number of chains | 3 |
Total formula weight | 74698.5 | |
Non-Polymers* | Number of molecules | 1 |
Total formula weight | 221.2 | |
All* | Total formula weight | 74919.7 |