8QFC
UFL1 E3 ligase bound 60S ribosome
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A (A) | 60S ribosomal protein L10a | polymer | 217 | 24879.4 | 1 | UniProt (P62906) Pfam (PF00687) | Homo sapiens (human) | CSA-19,Large ribosomal subunit protein uL1,Neural precursor cell expressed developmentally down-regulated protein 6,NEDD-6 |
| 2 | B (B) | E3 UFM1-protein ligase 1 | polymer | 809 | 91591.2 | 1 | UniProt (O94874) Pfam (PF09743) | Homo sapiens (human) | E3 UFM1-protein transferase 1,Multiple alpha-helix protein located at ER,Novel LZAP-binding protein,Regulator of C53/LZAP and DDRGK1 |
| 3 | C (C) | CDK5 regulatory subunit-associated protein 3 | polymer | 511 | 57458.9 | 1 | UniProt (Q96JB5) Pfam (PF05600) | Homo sapiens (human) | CDK5 activator-binding protein C53,LXXLL/leucine-zipper-containing ARF-binding protein,Protein HSF-27 |
| 4 | D (D) | DDRGK domain-containing protein 1 | polymer | 303 | 34644.4 | 1 | UniProt (Q96HY6) Pfam (PF09756) | Homo sapiens (human) | Dashurin,UFM1-binding and PCI domain-containing protein 1 |
| 5 | E (E) | Ubiquitin-fold modifier 1 | polymer | 87 | 9236.6 | 1 | UniProt (A0A8C2YGR4) Pfam (PF03671) UniProt (by SIFTS) (P61960) | Homo sapiens (human) |
Sequence modifications
B: 1 - 794 (UniProt: O94874)
C: 1 - 506 (UniProt: Q96JB5)
D: 29 - 314 (UniProt: Q96HY6)
E: -3 - 83 (UniProt: A0A8C2YGR4)
| PDB | External Database | Details |
|---|---|---|
| Met -14 | - | initiating methionine |
| Gly -13 | - | expression tag |
| His -12 | - | expression tag |
| His -11 | - | expression tag |
| His -10 | - | expression tag |
| His -9 | - | expression tag |
| His -8 | - | expression tag |
| His -7 | - | expression tag |
| Glu -6 | - | expression tag |
| Asn -5 | - | expression tag |
| Leu -4 | - | expression tag |
| Tyr -3 | - | expression tag |
| Phe -2 | - | expression tag |
| Gln -1 | - | expression tag |
| Gly 0 | - | expression tag |
| PDB | External Database | Details |
|---|---|---|
| Gly -4 | - | expression tag |
| Pro -3 | - | expression tag |
| Leu -2 | - | expression tag |
| Val -1 | - | expression tag |
| Asp 0 | - | expression tag |
| PDB | External Database | Details |
|---|---|---|
| Met 12 | - | initiating methionine |
| Trp 13 | - | expression tag |
| Ser 14 | - | expression tag |
| His 15 | - | expression tag |
| Pro 16 | - | expression tag |
| Gln 17 | - | expression tag |
| Phe 18 | - | expression tag |
| Glu 19 | - | expression tag |
| Lys 20 | - | expression tag |
| Leu 21 | - | expression tag |
| Glu 22 | - | expression tag |
| Val 23 | - | expression tag |
| Leu 24 | - | expression tag |
| Phe 25 | - | expression tag |
| Gln 26 | - | expression tag |
| Gly 27 | - | expression tag |
| Pro 28 | - | expression tag |
| PDB | External Database | Details |
|---|---|---|
| Pro -2 | Ser 113 | conflict |
| Ser 5 | Thr 120 | conflict |
| Ile 8 | Val 123 | conflict |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 5 |
| Total formula weight | 217810.7 | |
| All* | Total formula weight | 217810.7 |
