8Q4F

Structure of arbekacin bound Escherichia coli 70S ribosome

This is a non-PDB format compatible entry.

Entity

Entity ID	Chain ID	Description	Type	Chain length	Formula weight	Number of molecules	DB Name (Accession)	Biological source	Descriptive keywords
1	0	Large ribosomal subunit protein bL33	polymer	55	6388.6	1	UniProt (P0A7N9) In PDB	Escherichia coli	50S ribosomal protein L33
2	1	Large ribosomal subunit protein bL34	polymer	46	5397.5	1	UniProt (P0A7P5) In PDB	Escherichia coli	50S ribosomal protein L34
3	2	Large ribosomal subunit protein bL35	polymer	65	7313.0	1	UniProt (P0A7Q1) In PDB	Escherichia coli	50S ribosomal protein L35,Ribosomal protein A
4	3	Large ribosomal subunit protein bL36A	polymer	38	4377.4	1	UniProt (P0A7Q6) In PDB	Escherichia coli	50S ribosomal protein L36,Ribosomal protein B
5	4	Large ribosomal subunit protein bL31A	polymer	70	7887.1	1	UniProt (P0A7M9) In PDB	Escherichia coli	50S ribosomal protein L31
6	A	16S rRNA	polymer	1542	499690.0	1	GenBank (1758835854)	Escherichia coli
7	B	Small ribosomal subunit protein uS2	polymer	241	26781.7	1	UniProt (P0A7V0) In PDB	Escherichia coli	30S ribosomal protein S2
8	C	Small ribosomal subunit protein uS3	polymer	233	26031.3	1	UniProt (P0A7V3) In PDB	Escherichia coli	30S ribosomal protein S3
9	D	Small ribosomal subunit protein uS4	polymer	206	23514.2	1	UniProt (P0A7V8) In PDB	Escherichia coli	30S ribosomal protein S4
10	E	Small ribosomal subunit protein uS5	polymer	167	17629.4	1	UniProt (P0A7W1) In PDB	Escherichia coli	30S ribosomal protein S5
11	F	Small ribosomal subunit protein bS6, fully modified isoform	polymer	135	15727.5	1	UniProt (P02358) In PDB	Escherichia coli
12	G	Small ribosomal subunit protein uS7	polymer	179	20055.2	1	UniProt (P02359) In PDB	Escherichia coli	30S ribosomal protein S7
13	H	Small ribosomal subunit protein uS8	polymer	130	14146.6	1	UniProt (P0A7W7) In PDB	Escherichia coli	30S ribosomal protein S8
14	I	Small ribosomal subunit protein uS9	polymer	130	14886.3	1	UniProt (P0A7X3) In PDB	Escherichia coli	30S ribosomal protein S9
15	J	Small ribosomal subunit protein uS10	polymer	103	11755.6	1	UniProt (P0A7R5) In PDB	Escherichia coli	30S ribosomal protein S10,Transcription termination/antitermination protein NusE
16	K	Small ribosomal subunit protein uS11	polymer	129	13872.0	1	UniProt (P0A7R9) In PDB	Escherichia coli	30S ribosomal protein S11
17	L	Small ribosomal subunit protein uS12	polymer	124	13768.2	1	UniProt (P0A7S3) In PDB	Escherichia coli	30S ribosomal protein S12
18	M	Small ribosomal subunit protein uS13	polymer	118	13128.5	1	UniProt (P0A7S9) In PDB	Escherichia coli	30S ribosomal protein S13
19	N	Small ribosomal subunit protein uS14	polymer	101	11606.6	1	UniProt (P0AG59) In PDB	Escherichia coli	30S ribosomal protein S14
20	O	Small ribosomal subunit protein uS15	polymer	89	10290.8	1	UniProt (P0ADZ4) In PDB	Escherichia coli	30S ribosomal protein S15
21	P	Small ribosomal subunit protein bS16	polymer	82	9207.6	1	UniProt (P0A7T3) In PDB	Escherichia coli	30S ribosomal protein S16
22	Q	Small ribosomal subunit protein uS17	polymer	84	9724.5	1	UniProt (P0AG63) In PDB	Escherichia coli	30S ribosomal protein S17
23	R	Small ribosomal subunit protein bS18	polymer	75	9005.5	1	UniProt (P0A7T7) In PDB	Escherichia coli	30S ribosomal protein S18
24	S	Small ribosomal subunit protein uS19	polymer	92	10455.4	1	UniProt (P0A7U3) In PDB	Escherichia coli	30S ribosomal protein S19
25	T	Small ribosomal subunit protein bS20	polymer	87	9708.5	1	UniProt (P0A7U7) In PDB	Escherichia coli	30S ribosomal protein S20
26	U	Small ribosomal subunit protein bS21	polymer	71	8524.0	1	UniProt (P68679) In PDB	Escherichia coli	30S ribosomal protein S21
27	X	mRNA	polymer	28	9099.5	1		Escherichia coli
28	Z	tRNA-fMet	polymer	76	24497.6	1	GenBank (1848851804)	Escherichia coli
29	a	23S rRNA	polymer	2904	941612.4	1	GenBank (1109114233)	Escherichia coli
30	b	5S rRNA	polymer	120	38790.1	1	GenBank (CP035706.1)	Escherichia coli
31	c	Large ribosomal subunit protein uL2	polymer	273	29923.6	1	UniProt (P60422) In PDB	Escherichia coli	50S ribosomal protein L2
32	d	50S ribosomal protein L3	polymer	209	22277.5	1	UniProt (P60438) In PDB	Escherichia coli	ribosomal protein uL3
33	e	Large ribosomal subunit protein uL4	polymer	201	22121.6	1	UniProt (P60723) In PDB	Escherichia coli	50S ribosomal protein L4
34	f	Large ribosomal subunit protein uL5	polymer	179	20333.6	1	UniProt (P62399) In PDB	Escherichia coli	50S ribosomal protein L5
35	g	Large ribosomal subunit protein uL6	polymer	177	18932.8	1	UniProt (P0AG55) In PDB	Escherichia coli	50S ribosomal protein L6
36	i	Large ribosomal subunit protein uL13	polymer	142	16050.6	1	UniProt (P0AA10) In PDB	Escherichia coli	50S ribosomal protein L13
37	j	Large ribosomal subunit protein uL14	polymer	123	13565.1	1	UniProt (P0ADY3) In PDB	Escherichia coli	50S ribosomal protein L14
38	k	Large ribosomal subunit protein uL15	polymer	144	15008.5	1	UniProt (P02413) In PDB	Escherichia coli	50S ribosomal protein L15
39	l	50S ribosomal protein L16	polymer	136	15312.3	1	UniProt (P0ADY7) In PDB	Escherichia coli	ribosomal protein uL16
40	m	Large ribosomal subunit protein bL17	polymer	127	14393.7	1	UniProt (P0AG44) In PDB	Escherichia coli	50S ribosomal protein L17
41	n	Large ribosomal subunit protein uL18	polymer	117	12794.7	1	UniProt (P0C018) In PDB	Escherichia coli	50S ribosomal protein L18
42	o	Large ribosomal subunit protein bL19	polymer	115	13159.3	1	UniProt (P0A7K6) In PDB	Escherichia coli	50S ribosomal protein L19
43	p	Large ribosomal subunit protein bL20	polymer	118	13528.0	1	UniProt (P0A7L3) In PDB	Escherichia coli	50S ribosomal protein L20
44	q	Large ribosomal subunit protein bL21	polymer	103	11586.4	1	UniProt (P0AG48) In PDB	Escherichia coli	50S ribosomal protein L21
45	s	Large ribosomal subunit protein uL23	polymer	100	11222.2	1	UniProt (P0ADZ0) In PDB	Escherichia coli	50S ribosomal protein L23
46	t	Large ribosomal subunit protein uL24	polymer	104	11339.3	1	UniProt (P60624) In PDB	Escherichia coli	50S ribosomal protein L24
47	u	Large ribosomal subunit protein bL25	polymer	94	10713.5	1	UniProt (P68919) In PDB	Escherichia coli	50S ribosomal protein L25
48	v	Large ribosomal subunit protein bL27	polymer	85	9146.5	1	UniProt (P0A7L8) In PDB	Escherichia coli	50S ribosomal protein L27
49	w	Large ribosomal subunit protein bL28	polymer	78	9027.6	1	UniProt (P0A7M2) In PDB	Escherichia coli	50S ribosomal protein L28
50	x	Large ribosomal subunit protein uL29	polymer	63	7286.5	1	UniProt (P0A7M6) In PDB	Escherichia coli	50S ribosomal protein L29
51	y	Large ribosomal subunit protein uL30	polymer	59	6554.8	1	UniProt (P0AG51) In PDB	Escherichia coli	50S ribosomal protein L30
52	z	Large ribosomal subunit protein bL32	polymer	57	6463.4	1	UniProt (P0A7N4) In PDB	Escherichia coli	50S ribosomal protein L32
53	A, a	Arbekacin	non-polymer		552.6	2	Chemie (84G)

Sequence modifications

K: 1 - 129 (UniProt: P0A7R9)

PDB	External Database	Details
Asp 119	Asn 119	conflict

Contents of the asymmetric unit

Polymers	Number of chains	52
	Total formula weight	2145613.5
Non-Polymers*	Number of molecules	2
	Total formula weight	1105.2
All*	Total formula weight	2146718.7

*Water molecules are not included.