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8PTK

Composite structure of Dynein-Dynactin-JIP3-LIS1

This is a non-PDB format compatible entry.
Entity
Entity IDChain IDDescriptionTypeChain lengthFormula weightNumber of moleculesDB Name (Accession)Biological sourceDescriptive keywords
11, 2, 3, 4Platelet-activating factor acetylhydrolase IB subunit betapolymer41046710.04UniProt (P43034)
Pfam (PF08513)
Pfam (PF00400)
In PDB
Homo sapiens (human)Lissencephaly-1 protein,LIS-1,PAF acetylhydrolase 45 kDa subunit,PAF-AH 45 kDa subunit,PAF-AH alpha,PAFAH alpha
2A, B, C, D, E...ARP1 actin related protein 1 homolog Apolymer37642670.78UniProt (F2Z5G5)
Pfam (PF00022)
In PDB
Sus scrofa (pig)
3HActin, cytoplasmic 1polymer37541782.71UniProt (Q6QAQ1)
Pfam (PF00022)
In PDB
Sus scrofa (pig)Beta-actin
4JArp11polymer41746250.81UniProt (I3LHK5)
Pfam (PF00022)
In PDB
Sus scrofa (pig)
5KCapping protein (Actin filament) muscle Z-line, alpha 1polymer28633059.81UniProt (A0PFK5)
Pfam (PF01267)
In PDB
Sus scrofa (pig)F-actin capping protein alpha 1 subunit,F-actin capping protein subunit alpha 1
6LF-actin-capping protein subunit betapolymer27230669.81UniProt (A0PFK7)
Pfam (PF01115)
In PDB
Sus scrofa (pig)CapZ beta
7M, N, P, QDynactin subunit 2polymer40544704.44UniProt (A0A5G2QD80)
Pfam (PF04912)
In PDB
Sus scrofa (pig)
8O, RDynactin subunit 3polymer18621192.52UniProt (F1SEC0)
Pfam (PF07426)
In PDB
Sus scrofa (pig)Dynactin subunit 3 isoform 1
9S, TDynactin subunit 1polymer1281142015.52UniProt (A0A287B8J2)
Pfam (PF01302)
Pfam (PF12455)
In PDB
Sus scrofa (pig)150 kDa dynein-associated polypeptide,p150-glued
10UDynactin 6polymer19020703.91UniProt (D0G6S1)
In PDB
Sus scrofa (pig)
11WDynactin subunit 5polymer18220150.51UniProt (A0A286ZK88)
Pfam (PF21711)
In PDB
Sus scrofa (pig)
12X, xC-Jun-amino-terminal kinase-interacting protein 3polymer58165975.42UniProt (Q9UPT6)
Pfam (PF09744)
Pfam (PF16471)
In PDB
Homo sapiens (human)JIP-3,JNK-interacting protein 3,JNK MAP kinase scaffold protein 3,Mitogen-activated protein kinase 8-interacting protein 3
13YDynactin subunit 4polymer46752920.41UniProt (A0A4X1TB62)
Pfam (PF05502)
In PDB
Sus scrofa (pig)Dynactin subunit 4
14a, b, d, iDynein light chain 1, cytoplasmicpolymer8910381.94UniProt (P63167)
Pfam (PF01221)
In PDB
Homo sapiens (human)8 kDa dynein light chain,DLC8,Dynein light chain LC8-type 1,Protein inhibitor of neuronal nitric oxide synthase,PIN
15e, f, m, nCytoplasmic dynein 1 heavy chain 1polymer4646533055.14UniProt (Q14204)
Pfam (PF08385)
Pfam (PF08393)
Pfam (PF12774)
Pfam (PF17852)
Pfam (PF12775)
Pfam (PF22597)
Pfam (PF12780)
Pfam (PF12777)
Pfam (PF12781)
Pfam (PF03028)
Pfam (PF18198)
Pfam (PF18199)
In PDB
Homo sapiens (human)Cytoplasmic dynein heavy chain 1,Dynein heavy chain,cytosolic
16g, h, o, pCytoplasmic dynein 1 intermediate chain 2polymer61268442.14UniProt (Q13409)
Pfam (PF11540)
Pfam (PF00400)
In PDB
Homo sapiens (human)Cytoplasmic dynein intermediate chain 2,Dynein intermediate chain 2,cytosolic,DH IC-2
17j, q, r, uCytoplasmic dynein 1 light intermediate chain 2polymer49254173.24UniProt (O43237)
Pfam (PF05783)
In PDB
Homo sapiens (human)Dynein light intermediate chain 2,cytosolic,LIC-2,LIC53/55
18k, l, v, yDynein light chain Tctex-type 1polymer11312462.04UniProt (P63172)
Pfam (PF03645)
In PDB
Homo sapiens (human)
19s, t, w, zDynein light chain roadblock-type 1polymer9610934.64UniProt (Q9NP97)
Pfam (PF03259)
In PDB
Homo sapiens (human)Bithoraxoid-like protein,BLP,Dynein light chain 2A,cytoplasmic,Dynein-associated protein Km23,Roadblock domain-containing protein 1
20m, A, B, C, D...ADENOSINE-5'-DIPHOSPHATEnon-polymer427.216Chemie (ADP)
21m, n, H, J, e...ADENOSINE-5'-TRIPHOSPHATEnon-polymer507.26Chemie (ATP)
22YZINC IONnon-polymer65.43Chemie (ZN)
23m, n, e, fMAGNESIUM IONnon-polymer24.36Chemie (MG)
24m, nPHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTERnon-polymer506.24Chemie (ANP)
Sequence modifications
X, x: 1 - 560 (UniProt: Q9UPT6)
PDBExternal DatabaseDetails
Ser -6-expression tag
Asn -5-expression tag
Ile -4-expression tag
Glu -3-expression tag
Phe -2-expression tag
Leu -1-expression tag
Lys 0-expression tag
Gly 561-expression tag
Ser 562-expression tag
Gly 563-expression tag
Ser 564-expression tag
Gly 565-expression tag
Arg 566-expression tag
Trp 567-expression tag
Ser 568-expression tag
His 569-expression tag
Pro 570-expression tag
Gln 571-expression tag
Phe 572-expression tag
Glu 573-expression tag
Lys 574-expression tag
e, f, m, n: 1 - 4646 (UniProt: Q14204)
PDBExternal DatabaseDetails
Glu 1567Arg 1567engineered mutation
Glu 1610Lys 1610engineered mutation
g, h, o, p: 1 - 612 (UniProt: Q13409)
PDBExternal DatabaseDetails
Ser 484Thr 484conflict
Gly 499Asp 499conflict
Sequence viewer
Contents of the asymmetric unit
PolymersNumber of chains53
Total formula weight4168723.3
Non-Polymers*Number of molecules35
Total formula weight12245.1
All*Total formula weight4180968.5
*Water molecules are not included.

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PDB entries from 2024-07-17

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