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8PTK

Composite structure of Dynein-Dynactin-JIP3-LIS1

This is a non-PDB format compatible entry.
Entity
Entity IDChain IDDescriptionTypeChain lengthFormula weightNumber of moleculesDB Name (Accession)Biological sourceDescriptive keywords
1A, B, C, D
(1, 2, 3, 4)
Platelet-activating factor acetylhydrolase IB subunit betapolymer41046710.04UniProt (P43034)
Pfam (PF08513)
Pfam (PF00400)
Homo sapiens (human)Lissencephaly-1 protein,LIS-1,PAF acetylhydrolase 45 kDa subunit,PAF-AH 45 kDa subunit,PAF-AH alpha,PAFAH alpha
2E, F, G, H, I...
(A, B, C, D, E...)
ARP1 actin related protein 1 homolog Apolymer37642670.78UniProt (F2Z5G5)
Pfam (PF00022)
Sus scrofa (pig)
3L
(H)
Actin, cytoplasmic 1polymer37541782.71UniProt (Q6QAQ1)
Pfam (PF00022)
Sus scrofa (pig)Beta-actin
4N
(J)
Arp11polymer41746250.81UniProt (I3LHK5)
Pfam (PF00022)
Sus scrofa (pig)
5O
(K)
Capping protein (Actin filament) muscle Z-line, alpha 1polymer28633059.81UniProt (A0PFK5)
Pfam (PF01267)
Sus scrofa (pig)F-actin capping protein alpha 1 subunit,F-actin capping protein subunit alpha 1
6P
(L)
F-actin-capping protein subunit betapolymer27230669.81UniProt (A0PFK7)
Pfam (PF01115)
Sus scrofa (pig)CapZ beta
7Q, R, T, U
(M, N, P, Q)
Dynactin subunit 2polymer40544704.44UniProt (A0A5G2QD80)
Pfam (PF04912)
Sus scrofa (pig)
8S, V
(O, R)
Dynactin subunit 3polymer18621192.52UniProt (F1SEC0)
Pfam (PF07426)
Sus scrofa (pig)Dynactin subunit 3 isoform 1
9W, X
(S, T)
Dynactin subunit 1polymer1281142015.52UniProt (A0A287B8J2)
Pfam (PF01302)
Pfam (PF12455)
Sus scrofa (pig)150 kDa dynein-associated polypeptide,p150-glued
10Y
(U)
Dynactin 6polymer19020703.91UniProt (D0G6S1)Sus scrofa (pig)
11Z
(W)
Dynactin subunit 5polymer18220150.51UniProt (A0A286ZK88)
Pfam (PF21711)
Sus scrofa (pig)
12AA, YA
(X, x)
C-Jun-amino-terminal kinase-interacting protein 3polymer58165975.42UniProt (Q9UPT6)
Pfam (PF09744)
Pfam (PF16471)
Homo sapiens (human)JIP-3,JNK-interacting protein 3,JNK MAP kinase scaffold protein 3,Mitogen-activated protein kinase 8-interacting protein 3
13BA
(Y)
Dynactin subunit 4polymer46752920.41UniProt (A0A4X1TB62)
Pfam (PF05502)
Sus scrofa (pig)Dynactin subunit 4
14CA, DA, EA, JA
(a, b, d, i)
Dynein light chain 1, cytoplasmicpolymer8910381.94UniProt (P63167)
Pfam (PF01221)
Homo sapiens (human)8 kDa dynein light chain,DLC8,Dynein light chain LC8-type 1,Protein inhibitor of neuronal nitric oxide synthase,PIN
15FA, GA, NA, OA
(e, f, m, n)
Cytoplasmic dynein 1 heavy chain 1polymer4646533055.14UniProt (Q14204)
Pfam (PF08385)
Pfam (PF08393)
Pfam (PF12774)
Pfam (PF17852)
Pfam (PF12775)
Pfam (PF22597)
Pfam (PF12780)
Pfam (PF12777)
Pfam (PF12781)
Pfam (PF03028)
Pfam (PF18198)
Pfam (PF18199)
Homo sapiens (human)Cytoplasmic dynein heavy chain 1,Dynein heavy chain,cytosolic
16HA, IA, PA, QA
(g, h, o, p)
Cytoplasmic dynein 1 intermediate chain 2polymer61268442.14UniProt (Q13409)
Pfam (PF11540)
Pfam (PF00400)
Homo sapiens (human)Cytoplasmic dynein intermediate chain 2,Dynein intermediate chain 2,cytosolic,DH IC-2
17KA, RA, SA, VA
(j, q, r, u)
Cytoplasmic dynein 1 light intermediate chain 2polymer49254173.24UniProt (O43237)
Pfam (PF05783)
Homo sapiens (human)Dynein light intermediate chain 2,cytosolic,LIC-2,LIC53/55
18LA, MA, WA, ZA
(k, l, v, y)
Dynein light chain Tctex-type 1polymer11312462.04UniProt (P63172)
Pfam (PF03645)
Homo sapiens (human)
19AB, TA, UA, XA
(s, t, w, z)
Dynein light chain roadblock-type 1polymer9610934.64UniProt (Q9NP97)
Pfam (PF03259)
Homo sapiens (human)Bithoraxoid-like protein,BLP,Dynein light chain 2A,cytoplasmic,Dynein-associated protein Km23,Roadblock domain-containing protein 1
20AC, BB, CB, DB, EB...
(m, A, B, C, D...)
ADENOSINE-5'-DIPHOSPHATEnon-polymer427.216Chemie (ADP)
21BC, GC, IB, KB, QB...
(m, n, H, J, e...)
ADENOSINE-5'-TRIPHOSPHATEnon-polymer507.26Chemie (ATP)
22LB, MB, NB
(Y)
ZINC IONnon-polymer65.43Chemie (ZN)
23CC, HC, PB, RB, VB...
(m, n, e, f)
MAGNESIUM IONnon-polymer24.36Chemie (MG)
24DC, EC, IC, JC
(m, n)
PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTERnon-polymer506.24Chemie (ANP)
Sequence modifications
X, x: 1 - 560 (UniProt: Q9UPT6)
PDBExternal DatabaseDetails
Ser -6-expression tag
Asn -5-expression tag
Ile -4-expression tag
Glu -3-expression tag
Phe -2-expression tag
Leu -1-expression tag
Lys 0-expression tag
Gly 561-expression tag
Ser 562-expression tag
Gly 563-expression tag
Ser 564-expression tag
Gly 565-expression tag
Arg 566-expression tag
Trp 567-expression tag
Ser 568-expression tag
His 569-expression tag
Pro 570-expression tag
Gln 571-expression tag
Phe 572-expression tag
Glu 573-expression tag
Lys 574-expression tag
e, f, m, n: 1 - 4646 (UniProt: Q14204)
PDBExternal DatabaseDetails
Glu 1567Arg 1567engineered mutation
Glu 1610Lys 1610engineered mutation
g, h, o, p: 1 - 612 (UniProt: Q13409)
PDBExternal DatabaseDetails
Ser 484Thr 484conflict
Gly 499Asp 499conflict
Sequence viewer
Contents of the asymmetric unit
PolymersNumber of chains53
Total formula weight4168723.3
Non-Polymers*Number of molecules35
Total formula weight12245.1
All*Total formula weight4180968.5
*Water molecules are not included.

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PDB entries from 2025-06-11

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