8PP6
human RYBP-PRC1 bound to H2AK118ub1 nucleosome
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A, E (A, E) | Histone H3 (Fragment) | polymer | 135 | 15289.9 | 2 | UniProt (A0A7L0PXJ3) Pfam (PF00125) UniProt (by SIFTS) (P02299) | Drosophila melanogaster (fruit fly) | |
| 2 | B, F (B, F) | Histone H4 | polymer | 104 | 11521.6 | 2 | UniProt (A0A0B4KFZ9) Pfam (PF15511) UniProt (by SIFTS) (P84040) | Drosophila melanogaster (fruit fly) | |
| 3 | C, G (C, G) | Histone H2A | polymer | 123 | 13257.5 | 2 | UniProt (P84051) Pfam (PF00125) Pfam (PF16211) | Drosophila melanogaster (fruit fly) | |
| 4 | D, H (D, H) | Histone H2B | polymer | 123 | 13709.0 | 2 | UniProt (P02283) Pfam (PF00125) | Drosophila melanogaster (fruit fly) | |
| 5 | I (I) | DNA (215-MER) | polymer | 248 | 76456.6 | 1 | Homo sapiens | ||
| 6 | J (J) | DNA (215-MER) | polymer | 248 | 76716.8 | 1 | Homo sapiens | ||
| 7 | K (K) | RING1 and YY1-binding protein | polymer | 232 | 25220.0 | 1 | UniProt (Q8N488) Pfam (PF00641) Pfam (PF17219) | Homo sapiens (human) | Apoptin-associating protein 1,APAP-1,Death effector domain-associated factor,DED-associated factor,YY1 and E4TF1-associated factor 1 |
| 8 | L (M) | Ubiquitin-40S ribosomal protein S27a (Fragment) | polymer | 73 | 8305.5 | 1 | UniProt (J3QTR3) Pfam (PF00240) UniProt (by SIFTS) (P0CG47) | Homo sapiens (human) | |
| 9 | M (K) | ZINC ION | non-polymer | 65.4 | 1 | Chemie (ZN) |
Sequence modifications
B, F: 1 - 102 (UniProt: A0A0B4KFZ9)
D, H: 1 - 122 (UniProt: P02283)
K: 1 - 228 (UniProt: Q8N488)
| PDB | External Database | Details |
|---|---|---|
| Met -1 | - | initiating methionine |
| Ile 0 | - | expression tag |
| PDB | External Database | Details |
|---|---|---|
| Ile 0 | - | expression tag |
| PDB | External Database | Details |
|---|---|---|
| Gly -3 | - | expression tag |
| Pro -2 | - | expression tag |
| Asp -1 | - | expression tag |
| Ser 0 | - | expression tag |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 12 |
| Total formula weight | 294255.1 | |
| Non-Polymers* | Number of molecules | 1 |
| Total formula weight | 65.4 | |
| All* | Total formula weight | 294320.5 |
