8PMR
NADase from Aspergillus fumigatus with mutated calcium binding motif (D219A/E220A)
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A, B, C, D (A, B, C, D) | Conidial surface nicotinamide adenine dinucleotide glycohydrolase nadA | polymer | 248 | 27578.0 | 4 | UniProt (Q4WL81) Pfam (PF14021) | Aspergillus fumigatus Af293 | NADase,NAD(+) hydrolase nadA,NADP(+) hydrolase nadA |
| 2 | E (E) | 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 424.4 | 1 | In PDB GlyTouCan (G42666HT) | |||
| 3 | F (F) | beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 732.7 | 1 | In PDB GlyTouCan (G32152BH) | |||
| 4 | G, I (G, I) | alpha-L-fucopyranose-(1-6)-2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 367.3 | 2 | In PDB GlyTouCan (G86851RC) | |||
| 5 | H (H) | alpha-D-mannopyranose-(1-6)-beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 894.8 | 1 | In PDB GlyTouCan (G00395TQ) | |||
| 6 | J, K, L (J, K, L) | 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 570.5 | 3 | In PDB GlyTouCan (G21290RB) | |||
| 7 | M, O (A, B) | 2-(N-MORPHOLINO)-ETHANESULFONIC ACID | non-polymer | 195.2 | 2 | Chemie (MES) | |||
| 8 | N, P, T (B, C, D) | 2-acetamido-2-deoxy-beta-D-glucopyranose | non-polymer | 221.2 | 3 | Chemie (NAG) | |||
| 9 | Q, R, U, W (C, D) | GLYCEROL | non-polymer | 92.1 | 4 | Chemie (GOL) | |||
| 10 | S (C) | DI(HYDROXYETHYL)ETHER | non-polymer | 106.1 | 1 | Chemie (PEG) | |||
| 11 | V (D) | 1,2-ETHANEDIOL | non-polymer | 62.1 | 1 | Chemie (EDO) | |||
| 12 | AA, X, Y, Z (D, A, B, C) | water | water | 18.0 | 607 | Chemie (HOH) |
Sequence modifications
A, B, C, D: 1 - 234 (UniProt: Q4WL81)
| PDB | External Database | Details |
|---|---|---|
| Ala 219 | Asp 219 | engineered mutation |
| Ala 220 | Glu 220 | engineered mutation |
| Asp 235 | - | expression tag |
| Val 236 | - | expression tag |
| Leu 237 | - | expression tag |
| Phe 238 | - | expression tag |
| Gln 239 | - | expression tag |
| Gly 240 | - | expression tag |
| Pro 241 | - | expression tag |
| Gly 242 | - | expression tag |
| His 243 | - | expression tag |
| His 244 | - | expression tag |
| His 245 | - | expression tag |
| His 246 | - | expression tag |
| His 247 | - | expression tag |
| His 248 | - | expression tag |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 4 |
| Total formula weight | 110312.2 | |
| Branched | Number of molecules | 8 |
| Total formula weight | 4498.2 | |
| Non-Polymers* | Number of molecules | 11 |
| Total formula weight | 1590.7 | |
| All* | Total formula weight | 116401.1 |
