8PMR
NADase from Aspergillus fumigatus with mutated calcium binding motif (D219A/E220A)
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | PETRA III, EMBL c/o DESY BEAMLINE P13 (MX1) |
Synchrotron site | PETRA III, EMBL c/o DESY |
Beamline | P13 (MX1) |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2022-07-17 |
Detector | DECTRIS EIGER X 16M |
Wavelength(s) | 0.9763 |
Spacegroup name | P 65 |
Unit cell lengths | 65.897, 65.897, 488.199 |
Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
Resolution | 39.320 - 1.940 |
R-factor | 0.1838 |
Rwork | 0.182 |
R-free | 0.21570 |
Structure solution method | MOLECULAR REPLACEMENT |
RMSD bond length | 0.010 |
RMSD bond angle | 1.106 |
Data reduction software | XDS |
Data scaling software | Aimless |
Phasing software | PHASER |
Refinement software | PHENIX (1.19.2_4158) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 39.320 | 2.012 |
High resolution limit [Å] | 1.940 | 1.940 |
Rmerge | 0.076 | 2.110 |
Rpim | 0.023 | 0.885 |
Number of reflections | 85149 | 6421 |
<I/σ(I)> | 18.85 | 0.6 |
Completeness [%] | 96.3 | |
Redundancy | 11.6 | |
CC(1/2) | 0.999 | 0.275 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION | 6 | 293 | NaCl, MES, PEG 6000 |