8P5U
Single particle cryo-EM structure of homohexameric 2-oxoglutarate dehydrogenase OdhA from Corynebacterium glutamicum with Coenzyme A bound to the E2o domain
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A, B, C, D, E... (A, B, C, D, E...) | 2-oxoglutarate dehydrogenase E1/E2 component | polymer | 1223 | 134972.1 | 6 | UniProt (Q8NRC3) Pfam (PF16078) Pfam (PF00198) Pfam (PF00676) Pfam (PF02779) Pfam (PF16870) | Corynebacterium glutamicum ATCC 13032 | ODH E1/E2 component |
| 2 | AA, G, K, O, S... (F, A, B, C, D...) | MAGNESIUM ION | non-polymer | 24.3 | 6 | Chemie (MG) PubChem (888) | |||
| 3 | BA, H, L, P, T... (F, A, B, C, D...) | COENZYME A | non-polymer | 767.5 | 6 | Chemie (COA) | |||
| 4 | CA, I, M, Q, U... (F, A, B, C, D...) | ACETYL COENZYME *A | non-polymer | 809.6 | 6 | Chemie (ACO) PubChem (25210474) PubChem (24860528) PubChem (53393727) PubChem (56846401) PubChem (44141873) PubChem (45254004) PubChem (444493) PubChem (53245716) PubChem (87656764) PubChem (181) PubChem (6302) PubChem (87656765) PubChem (89102998) PubChem (91746285) PubChem (6857822) PubChem (6917106) PubChem (134956084) PubChem (10079099) PubChem (124511019) PubChem (11987898) PubChem (16061174) PubChem (124931617) PubChem (129274027) PubChem (154496096) PubChem (162968672) PubChem (170108977) | |||
| 5 | DA, J, N, R, V... (F, A, B, C, D...) | THIAMINE DIPHOSPHATE | non-polymer | 425.3 | 6 | Chemie (TPP) PubChem (1132) |
Sequence modifications
A, B, C, D, E, F: 1 - 1221 (UniProt: Q8NRC3)
| PDB | External Database | Details |
|---|---|---|
| Gly -1 | - | expression tag |
| Ser 0 | - | expression tag |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 6 |
| Total formula weight | 809832.5 | |
| Non-Polymers* | Number of molecules | 24 |
| Total formula weight | 12160.3 | |
| All* | Total formula weight | 821992.8 |
