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8OW1

Cryo-EM structure of the yeast Inner kinetochore bound to a CENP-A nucleosome.

This is a non-PDB format compatible entry.
Entity
Entity IDChain IDDescriptionTypeChain lengthFormula weightNumber of moleculesDB Name (Accession)Biological sourceDescriptive keywords
1A, B
(A, B)
Centromere-binding protein 1polymer35139444.72UniProt (P17106)
Pfam (PF00010)
Saccharomyces cerevisiae (baker's yeast)CBP-1,Centromere promoter factor 1,Centromere-binding factor 1
2AA, C
(I, II)
Inner kinetochore subunit CTF3polymer73384345.62UniProt (Q12748)Saccharomyces cerevisiae (baker's yeast)CENP-I homolog,Chromosome loss protein 3,Chromosome transmission fidelity protein 3,Constitutive centromere-associated network protein CTF3
3BA, D
(K, KK)
Inner kinetochore subunit MCM22polymer23927602.52UniProt (P47167)Saccharomyces cerevisiae (baker's yeast)CENP-K homolog,Constitutive centromere-associated network protein MCM22,Minichromosome maintenance protein 22
4CA, E
(H, HH)
Inner kinetochore subunit MCM16polymer18121166.12UniProt (Q12262)
Pfam (PF20993)
Saccharomyces cerevisiae (baker's yeast)CENP-H homolog,Constitutive centromere-associated network protein MCM16,Minichromosome maintenance protein 16
5F, J
(LL, L)
Inner kinetochore subunit IML3polymer24528093.22UniProt (P38265)Saccharomyces cerevisiae (baker's yeast)CENP-L homolog,Constitutive centromere-associated network protein IML3,Increased minichromosome loss protein 3,Minichromosome maintenance protein 19
6G, P
(NN, N)
Inner kinetochore subunit CHL4polymer45852743.72UniProt (P38907)
Pfam (PF05238)
Saccharomyces cerevisiae (baker's yeast)CENP-N homolog,Chromosome loss protein 4,Chromosome transmission fidelity protein 17,Constitutive centromere-associated network protein CHL4,Minichromosome maintenance protein 17
7H
(CT)
Centromere DNA-binding protein complex CBF3 subunit Cpolymer47856416.91UniProt (P35203)Saccharomyces cerevisiae (baker's yeast)Chromosome transmission fidelity protein 13,Kinetochore protein CTF13
8I, L
(ce, CE)
Centromere DNA-binding protein complex CBF3 subunit Bpolymer60871439.92UniProt (P40969)
Pfam (PF00172)
Pfam (PF16846)
Saccharomyces cerevisiae (baker's yeast)Centromere protein 3
9K
(SK)
Suppressor of kinetochore protein 1polymer19422357.31UniProt (P52286)
Pfam (PF03931)
Pfam (PF01466)
Saccharomyces cerevisiae (baker's yeast)Centromere DNA-binding protein complex CBF3 subunit D,E3 ubiquitin ligase complex SCF subunit SKP1
10M, S
(P, PP)
Inner kinetochore subunit CTF19polymer36942841.12UniProt (Q02732)Saccharomyces cerevisiae (baker's yeast)CENP-P homolog,Chromosome transmission fidelity protein 19,Constitutive centromere-associated network protein CTF19,Minichromosome maintenance protein 18
11DA, N
(Q, QQ)
Inner kinetochore subunit OKP1polymer40647427.22UniProt (P53298)Saccharomyces cerevisiae (baker's yeast)CENP-Q homolog,Constitutive centromere-associated network protein OKP1,Outer kinetochore protein 1
12O, U
(OO, O)
Inner kinetochore subunit MCM21polymer36843028.92UniProt (Q06675)
Pfam (PF09496)
Saccharomyces cerevisiae (baker's yeast)CENP-O homolog,Chromosome transmission fidelity protein 5,Constitutive centromere-associated network protein MCM21,Minichromosome maintenance protein 21
13OA, Q
(T, TT)
Inner kinetochore subunit CNN1polymer36141359.82UniProt (P43618)Saccharomyces cerevisiae (baker's yeast)CENP-T homolog,Co-purified with NNF1 protein 1,Constitutive centromere-associated network protein CNN1
14R, X
(U, UU)
Inner kinetochore subunit AME1polymer32437506.72UniProt (P38313)
Pfam (PF20994)
Saccharomyces cerevisiae (baker's yeast)Associated with microtubules and essential protein 1,CENP-U homolog,Constitutive centromere-associated network protein AME1
15PA, T
(W, WW)
Inner kinetochore subunit WIP1polymer8910255.52UniProt (Q2V2P8)Saccharomyces cerevisiae (baker's yeast)CENP-W homolog,Constitutive centromere-associated network protein WIP1,W-like protein 1
16V, Y
(Y, YY)
Inner kinetochore subunit NKP1polymer23827006.52UniProt (Q12493)Saccharomyces cerevisiae (baker's yeast)Constitutive centromere-associated network protein NKP1,Non-essential kinetochore protein 1
17W, Z
(Z, ZZ)
Inner kinetochore subunit NKP2polymer15317877.02UniProt (Q06162)
Pfam (PF09447)
Saccharomyces cerevisiae (baker's yeast)Constitutive centromere-associated network protein NKP2,Non-essential kinetochore protein 2
18EA
(D)
C0N3polymer15347239.31Saccharomyces cerevisiae
19FA
(E)
C0N3polymer15347194.21Saccharomyces cerevisiae
20GA, JA
(b, f)
Histone H4polymer10311395.42UniProt (P02309)
Pfam (PF15511)
Saccharomyces cerevisiae (baker's yeast)
21HA, LA
(d, h)
Histone H2B.1polymer13114280.42UniProt (P02293)
Pfam (PF00125)
Saccharomyces cerevisiae (baker's yeast)Suppressor of Ty protein 12
22IA, NA
(e, a)
Histone H3-like centromeric protein CSE4polymer22926885.42UniProt (P36012)
Pfam (PF00125)
Saccharomyces cerevisiae (baker's yeast)CENP-A homolog,CENPA homolog,Chromosome segregation protein 4
23KA, MA
(g, c)
Histone H2A.1polymer13214013.22UniProt (P04911)
Pfam (PF00125)
Pfam (PF16211)
Saccharomyces cerevisiae (baker's yeast)
Sequence viewer
Contents of the asymmetric unit
PolymersNumber of chains42
Total formula weight1490633.4
All*Total formula weight1490633.4
*Water molecules are not included.

239492

PDB entries from 2025-07-30

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