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SummaryStructural detailsExperimental detailsFunctional detailsSequence NeighborHistoryDownloads

8OVJ

CRYO-EM STRUCTURE OF LEISHMANIA MAJOR 80S RIBOSOME : PARENTAL STRAIN

This is a non-PDB format compatible entry.
Entity
Entity IDChain IDDescriptionTypeChain lengthFormula weightNumber of moleculesDB Name (Accession)Biological sourceDescriptive keywords
11LSUa_rRNA_chain_1polymer1782577046.51GenBank (321438308)Leishmania major strain Friedlin
23SR1_chain_3polymer21669146.61GenBank (321438308)Leishmania major strain Friedlin
34SR2_chain_4polymer18359160.11Leishmania major strain Friedlin
45SR4_chain_5polymer13543479.81Leishmania major strain Friedlin
56SR6_chain_6polymer7323336.91GenBank (321438308)Leishmania major strain Friedlin
675.8S_rRNA_chain_7polymer17154989.61GenBank (1207899567)Leishmania major strain Friedlin
785S_rRNA_chain_8polymer12339450.41GenBank (321399712)Leishmania major strain Friedlin
8APutative 60S ribosomal protein L2polymer26028331.91UniProt (Q4FWX5)
Pfam (PF00181)
Pfam (PF03947)
In PDB		Leishmania major strain Friedlin
9BPutative ribosomal protein L3polymer41947593.71UniProt (Q4Q2Q6)
Pfam (PF00297)
In PDB		Leishmania major strain Friedlin
10CPutative ribosomal protein L1apolymer37341096.91UniProt (E9ADW5)
Pfam (PF00573)
Pfam (PF14374)
In PDB		Leishmania major strain Friedlin
11D60S ribosomal protein L11polymer18821694.51UniProt (P48157)
Pfam (PF00281)
Pfam (PF00673)
In PDB		Leishmania major strain Friedlin
12EPutative 60S ribosomal protein L9polymer19021594.31UniProt (Q4QC91)
Pfam (PF00347)
In PDB		Leishmania major strain Friedlin
13FPutative 60S ribosomal protein L6polymer19521126.71UniProt (Q4Q4D3)
Pfam (PF01159)
In PDB		Leishmania major strain Friedlin
14G60S ribosomal protein L7apolymer26429824.21UniProt (Q4QIP1)
Pfam (PF01248)
In PDB		Leishmania major strain Friedlin
15HPutative 60S ribosomal protein L13apolymer22225509.21UniProt (Q4QFG2)
Pfam (PF00572)
In PDB		Leishmania major strain Friedlin
16IPutative 60S ribosomal protein L13polymer22024849.01UniProt (E9AEA8)
Pfam (PF01294)
In PDB		Leishmania major strain Friedlin
17JPutative 60S ribosomal protein L23polymer13914982.61UniProt (E9AFK3)
Pfam (PF00238)
In PDB		Leishmania major strain Friedlin
18KPutative 40S ribosomal protein L14polymer17519948.61UniProt (Q4QBJ1)
Pfam (PF00467)
Pfam (PF01929)
In PDB		Leishmania major strain Friedlin
19LPutative 60S ribosomal protein L27A/L29polymer14516135.91UniProt (E9AFK0)
Pfam (PF00828)
In PDB		Leishmania major strain Friedlin
20MRibosomal protein L15polymer20424498.01UniProt (Q4Q6S3)
Pfam (PF00827)
In PDB		Leishmania major strain Friedlin
21NPutative 60S ribosomal protein L10polymer21324607.21UniProt (O97213)
Pfam (PF00252)
In PDB		Leishmania major strain Friedlin
22OPutative 60S ribosomal protein L5polymer30534058.61UniProt (E9AF09)
Pfam (PF17144)
Pfam (PF14204)
In PDB		Leishmania major strain Friedlin
23P60S ribosomal protein L18polymer19822071.11UniProt (Q4QG98)
Pfam (PF17135)
In PDB		Leishmania major strain Friedlin
24QPutative 60S ribosomal protein L19polymer25428896.11UniProt (Q4QJ37)
Pfam (PF01280)
In PDB		Leishmania major strain Friedlin
25R60S ribosomal protein L18apolymer17920852.31UniProt (Q4Q5J4)
Pfam (PF01775)
In PDB		Leishmania major strain Friedlin
26S1SSU_rRNA_chain_S1polymer2204710628.71Leishmania major strain Friedlin
27S4E-site_tRNA_chain_S4polymer206451.91Leishmania major strain Friedlin
28SA40S ribosomal protein S3apolymer26430062.01UniProt (Q4FX73)
Pfam (PF01015)
In PDB		Leishmania major strain FriedlinLmS3a-related protein,LmS3arp
29SB40S ribosomal protein SApolymer24627536.61UniProt (Q4Q0Q0)
Pfam (PF00318)
In PDB		Leishmania major strain Friedlin
30SCPutative 40S ribosomal protein S3polymer21924511.81UniProt (Q4Q4A0)
Pfam (PF07650)
Pfam (PF00189)
In PDB		Leishmania major strain Friedlin
31SDPutative 40S ribosomal protein S9polymer19022188.91UniProt (Q4QIM3)
Pfam (PF00163)
Pfam (PF01479)
In PDB		Leishmania major strain Friedlin
32SE40S ribosomal protein S4polymer27330742.11UniProt (Q4QG31)
Pfam (PF08071)
Pfam (PF01479)
Pfam (PF00900)
Pfam (PF00467)
Pfam (PF16121)
In PDB		Leishmania major strain Friedlin
33SF40S ribosomal protein S2polymer26528791.11UniProt (Q4QDL5)
Pfam (PF00333)
Pfam (PF03719)
In PDB		Leishmania major strain Friedlin
34SG40S ribosomal protein S6polymer24928370.21UniProt (Q9NE83)
Pfam (PF01092)
In PDB		Leishmania major strain Friedlin
35SH40S ribosomal protein S5polymer19021336.61UniProt (Q868B1)
Pfam (PF00177)
In PDB		Leishmania major strain Friedlin40S ribosomal protein S5A,40S ribosomal protein S5B
36SI40S ribosomal protein S7polymer20023765.21UniProt (E9AC32)
Pfam (PF01251)
In PDB		Leishmania major strain Friedlin
37SK40S ribosomal protein S8polymer22024984.31UniProt (P25204)
Pfam (PF01201)
In PDB		Leishmania major strain Friedlin
38SLPutative 40S ribosomal protein S16polymer14916718.61UniProt (Q4Q9A5)
Pfam (PF00380)
In PDB		Leishmania major strain FriedlinRibosomal protein S16
39SMPutative ribosomal protein S20polymer11613032.01UniProt (Q4Q8G4)
Pfam (PF00338)
In PDB		Leishmania major strain Friedlin
40SNPutative 40S ribosomal protein S10polymer16818681.11UniProt (Q4Q1X7)
Pfam (PF03501)
In PDB		Leishmania major strain Friedlin
41SO40S ribosomal protein S14polymer14415623.21UniProt (Q4Q8H1)
Pfam (PF00411)
In PDB		Leishmania major strain Friedlin
42SPPutative 40S ribosomal protein S23polymer14315969.61UniProt (Q4QC89)
Pfam (PF00164)
In PDB		Leishmania major strain Friedlin
43SQ40S ribosomal protein S12polymer14115627.81UniProt (Q4QG97)
Pfam (PF01248)
In PDB		Leishmania major strain Friedlin
44SRPutative 40S ribosomal protein S18polymer15317433.41UniProt (Q4Q1Y3)
Pfam (PF00416)
In PDB		Leishmania major strain FriedlinRibosomal protein S18
45SSPutative ribosomal protein S29polymer576696.91UniProt (Q4Q817)
Pfam (PF00253)
In PDB		Leishmania major strain Friedlin
46STPutative 40S ribosomal protein S13polymer15117482.81UniProt (Q4Q3M1)
Pfam (PF08069)
Pfam (PF00312)
In PDB		Leishmania major strain Friedlin
47SUPutative 40S ribosomal protein S11polymer17320023.51Leishmania major strain Friedlin
48SVPutative 40S ribosomal protein S17polymer14316551.51UniProt (Q4Q806)
Pfam (PF00833)
In PDB		Leishmania major strain Friedlin
49SWPutative 40S ribosomal protein S15polymer15217472.41UniProt (Q4QBV0)
Pfam (PF00203)
In PDB		Leishmania major strain Friedlin
50SX40S ribosomal protein S19-like proteinpolymer16118158.11UniProt (E9AEE8)
Pfam (PF01090)
In PDB		Leishmania major strain Friedlin
51SYPutative 40S ribosomal protein S21polymer16417035.61UniProt (Q4QH01)
Pfam (PF01249)
In PDB		Leishmania major strain Friedlin
52SZ40S ribosomal protein S24polymer13715808.91UniProt (Q4Q1D2)
Pfam (PF01282)
In PDB		Leishmania major strain Friedlin
53SPutative 60S ribosomal protein L21polymer15918068.21UniProt (Q4QEX4)
Pfam (PF01157)
In PDB		Leishmania major strain Friedlin
54Sa40S ribosomal protein S25polymer12013071.41UniProt (Q4Q9X4)
Pfam (PF03297)
In PDB		Leishmania major strain Friedlin
55ScPutative 40S ribosomal protein S27-1polymer869819.51UniProt (Q4Q140)
Pfam (PF01667)
In PDB		Leishmania major strain Friedlin
56Sb40S ribosomal protein S26polymer11212794.31UniProt (Q4Q8L6)
Pfam (PF01283)
In PDB		Leishmania major strain Friedlin
57SdPutative 40S ribosomal protein S33polymer879763.21UniProt (Q4Q931)
Pfam (PF01200)
In PDB		Leishmania major strain Friedlin
58Se40S ribosomal protein S30polymer667394.91UniProt (Q4Q7P0)
Pfam (PF04758)
In PDB		Leishmania major strain Friedlin
59SgGuanine nucleotide-binding protein subunit beta-like proteinpolymer31234441.51UniProt (Q4Q7Y7)
Pfam (PF00400)
In PDB		Leishmania major strain Friedlin
60ShPutative RNA binding proteinpolymer23525229.31UniProt (Q4Q5K7)
Pfam (PF00076)
In PDB		Leishmania major strain Friedlin
61SJPutative 40S ribosomal protein S15Apolymer13014719.31UniProt (Q4QGW3)
Pfam (PF00410)
In PDB		Leishmania major strain Friedlin
62TPutative 60S ribosomal protein L17polymer16619124.51UniProt (Q4QAX6)
Pfam (PF00237)
In PDB		Leishmania major strain Friedlin
63UPutative 60S ribosomal protein L22polymer12915030.51UniProt (Q4Q0X2)
Pfam (PF01776)
In PDB		Leishmania major strain Friedlin
64VPutative 60S ribosomal protein L23apolymer14516372.41UniProt (Q4QJ20)
Pfam (PF00276)
In PDB		Leishmania major strain Friedlin
65WPutative 60S ribosomal protein L26polymer14316217.11UniProt (Q4QAC5)
Pfam (PF16906)
Pfam (PF00467)
In PDB		Leishmania major strain Friedlin
66XPutative ribosomal protein L24polymer12414608.21UniProt (Q4Q1W6)
Pfam (PF01246)
In PDB		Leishmania major strain Friedlin
67Y60S ribosomal protein L27polymer13415469.31UniProt (Q4Q504)
Pfam (PF00467)
Pfam (PF01777)
In PDB		Leishmania major strain Friedlin
68ZPutative 60S ribosomal protein L28polymer14716314.91UniProt (Q4QGW7)
Pfam (PF01778)
In PDB		Leishmania major strain Friedlin
69aPutative 60S ribosomal protein L35polymer12715262.21UniProt (Q4Q8V7)
Pfam (PF00831)
In PDB		Leishmania major strain Friedlin
70b60S ribosomal protein L29polymer708001.31UniProt (Q4Q178)
Pfam (PF01779)
In PDB		Leishmania major strain Friedlin
71cPutative 60S ribosomal protein L7polymer25228900.01UniProt (Q4Q9H4)
Pfam (PF08079)
Pfam (PF00327)
In PDB		Leishmania major strain Friedlin
72d60S ribosomal protein L30polymer10411370.21UniProt (E9AEK1)
Pfam (PF01248)
In PDB		Leishmania major strain Friedlin
73ePutative 60S ribosomal subunit protein L31polymer18821316.31UniProt (E9AFF2)
Pfam (PF01198)
In PDB		Leishmania major strain Friedlin
74f60S ribosomal protein L32polymer13315458.21UniProt (Q4QC11)
Pfam (PF01655)
In PDB		Leishmania major strain Friedlin
75gPutative ribosomal protein l35apolymer14416492.31UniProt (Q4QHL3)
Pfam (PF01247)
In PDB		Leishmania major strain Friedlin
76hPutative 60S ribosomal protein L34polymer16819335.11UniProt (Q4QDP9)
Pfam (PF01199)
In PDB		Leishmania major strain Friedlin
77iPutative 60S Ribosomal protein L36polymer10511975.21UniProt (Q4QCE1)
Pfam (PF01158)
In PDB		Leishmania major strain Friedlin
78jRibosomal protein L37polymer839862.61UniProt (E9AEH2)
Pfam (PF01907)
In PDB		Leishmania major strain Friedlin
79kPutative ribosomal protein L38polymer839479.31UniProt (Q4Q8X0)
Pfam (PF01781)
In PDB		Leishmania major strain Friedlin
80lPutative 60S ribosomal protein L39polymer516504.81UniProt (Q4QEQ0)
Pfam (PF00832)
In PDB		Leishmania major strain Friedlin
81mUbiquitin-60S ribosomal protein L40polymer12814711.41UniProt (P69201)
Pfam (PF00240)
Pfam (PF01020)
In PDB		Leishmania major strain Friedlin
82n60S ribosomal protein L41polymer344390.51Leishmania major strain Friedlin
83o60S ribosomal protein L37apolymer9210337.21UniProt (Q4QC01)
Pfam (PF01780)
In PDB		Leishmania major strain FriedlinPutative 60S ribosomal protein L37a
84pPutative 60S ribosomal protein L44polymer10612302.71UniProt (Q4Q3L3)
Pfam (PF00935)
In PDB		Leishmania major strain Friedlin
852LSUb_rRNA_chain_2polymer1526492500.81Leishmania major strain Friedlin
861, S1, 2, 5, SH...MAGNESIUM IONnon-polymer24.3302Chemie (MG)
87S1, 5, SG, 7, 1...POTASSIUM IONnon-polymer39.143Chemie (K)
884, S1, 2, Sb, 1...SODIUM IONnon-polymer23.017Chemie (NA)
89SS, Sb, j, o, pZINC IONnon-polymer65.45Chemie (ZN)
90waterwater18.049Chemie (HOH)
Sequence modifications
1: 1 - 1782 (GenBank: 321438308)
PDBExternal DatabaseDetails
G 164U 993097conflict
U 165C 993098conflict
A 198C 993131conflict
A 523G 993456conflict
U 588A 993521conflict
C 593U 993526conflict
A 1428C 994361conflict
I: 1 - 220 (UniProt: E9AEA8)
PDBExternal DatabaseDetails
Arg 203Asn 203conflict
Sequence viewer
Contents of the asymmetric unit
PolymersNumber of chains85
Total formula weight3522604.2
Non-Polymers*Number of molecules367
Total formula weight9739.2
All*Total formula weight3532343.4
*Water molecules are not included.

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PDB entries from 2024-07-24

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