8OIP
28S mammalian mitochondrial small ribosomal subunit with mtRF1 and P-site tRNA
This is a non-PDB format compatible entry.
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A (BX) | 39S ribosomal protein L19, mitochondrial | polymer | 303 | 34528.8 | 1 | UniProt (I3LNJ0) Pfam (PF01245) | Sus scrofa (pig) | Mitochondrial ribosomal protein L19 |
| 2 | B (Bd) | bL31m | polymer | 126 | 15156.5 | 1 | UniProt (I3L9J0) Pfam (PF09776) UniProt (by SIFTS) (A0A4X1ULI6) | Sus scrofa (pig) | |
| 3 | C (AA) | 12S rRNA | polymer | 962 | 309087.3 | 1 | GenBank (NC_012095.1) | Sus scrofa (pig) | |
| 4 | D (AB) | 28S ribosomal protein S35, mitochondrial isoform 1 | polymer | 366 | 41357.8 | 1 | UniProt (F1SG95) Pfam (PF10213) | Sus scrofa (pig) | Mitochondrial ribosomal protein S35 |
| 5 | E (AC) | Mitochondrial ribosomal protein S24 | polymer | 167 | 18935.2 | 1 | UniProt (A0A287ANU4) Pfam (PF14955) | Sus scrofa (pig) | |
| 6 | F (AD) | Aurora kinase A interacting protein 1 | polymer | 199 | 22843.9 | 1 | UniProt (A0A287B3R8) Pfam (PF08213) UniProt (by SIFTS) (A0A8D2A802) | Sus scrofa (pig) | |
| 7 | G (AE) | bS6m,Mitochondrial ribosomal protein S6 | polymer | 376 | 41085.4 | 1 | UniProt (A0A4X1TSM9) Pfam (PF01250) | Sus scrofa | |
| 8 | H (AF) | Mitochondrial ribosomal protein S7 | polymer | 242 | 28150.9 | 1 | UniProt (A0A286ZJ25) Pfam (PF00177) | Sus scrofa (pig) | |
| 9 | I (AG) | P-site Met-tRNA(fMet) | polymer | 72 | 22823.7 | 1 | Homo sapiens | ||
| 10 | J (AH) | Mitochondrial ribosomal protein S10 | polymer | 200 | 23105.7 | 1 | UniProt (F1RUU2) Pfam (PF00338) | Sus scrofa (pig) | |
| 11 | K (AI) | mRNA | polymer | 9 | 2902.8 | 1 | Homo sapiens | ||
| 12 | L (AJ) | Mitochondrial ribosomal protein S12 | polymer | 139 | 15257.1 | 1 | UniProt (A0A0M3KL52) Pfam (PF00164) | Sus scrofa (pig) | Mitoribosomal protein us12m,mrps12 |
| 13 | M (AK) | Mitochondrial ribosomal protein S14 | polymer | 128 | 15120.7 | 1 | UniProt (A0A0M3KL53) Pfam (PF00253) | Sus scrofa (pig) | Mitoribosomal protein us14m,mrps14 |
| 14 | N (AL) | 28S ribosomal protein S15, mitochondrial | polymer | 259 | 29596.9 | 1 | UniProt (A0A287AKS1) Pfam (PF00312) | Sus scrofa (pig) | |
| 15 | O (AM) | 28S ribosomal protein S16, mitochondrial | polymer | 135 | 15182.7 | 1 | UniProt (A0A480JTD7) Pfam (PF00886) | Sus scrofa (pig) | Mitochondrial ribosomal protein S16 |
| 16 | P (AN) | uS17m | polymer | 130 | 14452.0 | 1 | UniProt (F1RIU0) Pfam (PF00366) UniProt (by SIFTS) (A0A8D1UDM1) | Sus scrofa (pig) | |
| 17 | Q (AO) | 28S ribosomal protein S18b, mitochondrial | polymer | 258 | 29220.5 | 1 | UniProt (Q767K8) Pfam (PF01084) | Sus scrofa (pig) | S18mt-b,28S ribosomal protein S18-2,mitochondrial,MRP-S18-2 |
| 18 | R (AP) | Mitochondrial ribosomal protein S18C | polymer | 143 | 16211.1 | 1 | UniProt (A0A0M3KL54) Pfam (PF01084) | Sus scrofa (pig) | Mitoribosomal protein bs18m,mrps18c |
| 19 | S (AQ) | 28S ribosomal protein S21, mitochondrial | polymer | 87 | 10724.5 | 1 | UniProt (A0A286ZNB3) Pfam (PF01165) | Sus scrofa (pig) | |
| 20 | T (AR) | Mitochondrial ribosomal protein S22 | polymer | 382 | 43234.6 | 1 | UniProt (A0A287AQT5) Pfam (PF10245) | Sus scrofa (pig) | |
| 21 | U (AS) | mS23 | polymer | 190 | 21666.7 | 1 | UniProt (A0A287AEW3) Pfam (PF10484) | Sus scrofa (pig) | |
| 22 | V (AT) | Mitochondrial ribosomal protein S25 | polymer | 173 | 19954.2 | 1 | UniProt (A0A0M3KL55) Pfam (PF05047) | Sus scrofa (pig) | Mitoribosomal protein ms25,mrps25 |
| 23 | W (AU) | Mitochondrial ribosomal protein S26 | polymer | 205 | 23637.9 | 1 | UniProt (A0A287AY01) | Sus scrofa (pig) | |
| 24 | X (AV) | Mitochondrial ribosomal protein S27 | polymer | 395 | 45761.8 | 1 | UniProt (A0A5G2R1I0) Pfam (PF10037) | Sus scrofa (pig) | |
| 25 | Y (AW) | Mitoribosomal protein ms28, mrps28 | polymer | 188 | 21014.9 | 1 | UniProt (A0A0M3KL56) Pfam (PF10246) | Sus scrofa (pig) | |
| 26 | Z (AX) | Death associated protein 3 | polymer | 410 | 46966.1 | 1 | UniProt (I3LS10) Pfam (PF10236) UniProt (by SIFTS) (A0A8D1XNL0) | Sus scrofa (pig) | |
| 27 | AA (AY) | 28S ribosomal protein S31, mitochondrial | polymer | 381 | 43516.5 | 1 | UniProt (F1RME2) Pfam (PF15433) | Sus scrofa (pig) | |
| 28 | BA (AZ) | Mitochondrial ribosomal protein S33 | polymer | 148 | 16971.7 | 1 | UniProt (F1S8G3) Pfam (PF08293) UniProt (by SIFTS) (A0A4X1V2H3) | Sus scrofa (pig) | |
| 29 | CA (Aa) | Peptide chain release factor 1, mitochondrial | polymer | 474 | 55569.7 | 1 | UniProt (O75570) Pfam (PF03462) Pfam (PF00472) | Homo sapiens (human) | MRF-1,MtRF-1 |
| 30 | DA (Ab) | Mitochondrial ribosomal protein S2 | polymer | 289 | 31731.6 | 1 | UniProt (F1S001) Pfam (PF00318) | Sus scrofa (pig) | |
| 31 | EA (Ac) | Coiled-coil-helix-coiled-coil-helix domain containing 1 | polymer | 118 | 13603.9 | 1 | UniProt (F1SU49) Pfam (PF06747) UniProt (by SIFTS) (A0A4X1SZV4) | Sus scrofa (pig) | |
| 32 | FA (Ad) | 28S ribosomal protein S5, mitochondrial isoform X2 | polymer | 430 | 48213.1 | 1 | UniProt (F1SU66) Pfam (PF21251) Pfam (PF00333) Pfam (PF03719) | Sus scrofa (pig) | Mitochondrial ribosomal protein S5 |
| 33 | GA (Ae) | mS39 | polymer | 692 | 78518.2 | 1 | UniProt (K7GKS8) Pfam (PF22330) Pfam (PF13812) | Sus scrofa (pig) | |
| 34 | HA (Ag) | uS9m | polymer | 397 | 45604.6 | 1 | UniProt (I3LU08) Pfam (PF00380) | Sus scrofa (pig) | |
| 35 | IA (Ai) | Mitochondrial ribosomal protein S11 | polymer | 196 | 20856.9 | 1 | UniProt (A0A286ZJJ6) Pfam (PF00411) | Sus scrofa (pig) | |
| 36 | JA (Aj) | Mitochondrial ribosomal protein S34 | polymer | 505 | 55714.4 | 1 | UniProt (A0A287AVS9) Pfam (PF16053) | Sus scrofa (pig) | |
| 37 | AB, AC, AD, AE, BB... (AA, AD, AG, AI, AJ...) | MAGNESIUM ION | non-polymer | 24.3 | 127 | Chemie (MG) | |||
| 38 | ZE (AA) | SPERMINE | non-polymer | 202.3 | 1 | Chemie (SPM) | |||
| 39 | AF (AA) | SPERMIDINE | non-polymer | 145.2 | 1 | Chemie (SPD) | |||
| 40 | BF, CF, DF, EF, FF... (AA) | POTASSIUM ION | non-polymer | 39.1 | 11 | Chemie (K) | |||
| 41 | SF (AO) | ZINC ION | non-polymer | 65.4 | 1 | Chemie (ZN) | |||
| 42 | TF, UF (AP, AT) | FE-S-O HYBRID CLUSTER | non-polymer | 335.5 | 2 | Chemie (FS2) | |||
| 43 | VF (AX) | ADENOSINE-5'-TRIPHOSPHATE | non-polymer | 507.2 | 1 | Chemie (ATP) | |||
| 44 | XF (AX) | GUANOSINE-5'-DIPHOSPHATE | non-polymer | 443.2 | 1 | Chemie (GDP) | |||
| 45 | ZF (AX) | water | water | 18.0 | 3 | Chemie (HOH) |
Sequence modifications
AE: -251 - -124 (PDB: 8OIP)
AE: -123 - 124 (UniProt: A0A4X1TSM9)
Aa: 1 - 445 (UniProt: O75570)
Ai: 1 - 196 (UniProt: A0A286ZJJ6)
AE: -123 - 124 (UniProt: A0A4X1TSM9)
| PDB | External Database | Details |
|---|---|---|
| Ser -22 | Pro 129 | conflict |
| PDB | External Database | Details |
|---|---|---|
| Gly 446 | - | expression tag |
| Gly 447 | - | expression tag |
| Ser 448 | - | expression tag |
| Gly 449 | - | expression tag |
| Gly 450 | - | expression tag |
| Ser 451 | - | expression tag |
| Gly 452 | - | expression tag |
| Asp 453 | - | expression tag |
| Tyr 454 | - | expression tag |
| Lys 455 | - | expression tag |
| Asp 456 | - | expression tag |
| His 457 | - | expression tag |
| Asp 458 | - | expression tag |
| Gly 459 | - | expression tag |
| Asp 460 | - | expression tag |
| Tyr 461 | - | expression tag |
| Lys 462 | - | expression tag |
| Asp 463 | - | expression tag |
| His 464 | - | expression tag |
| Asp 465 | - | expression tag |
| Ile 466 | - | expression tag |
| Asp 467 | - | expression tag |
| Tyr 468 | - | expression tag |
| Lys 469 | - | expression tag |
| Asp 470 | - | expression tag |
| Asp 471 | - | expression tag |
| Asp 472 | - | expression tag |
| Asp 473 | - | expression tag |
| Lys 474 | - | expression tag |
| PDB | External Database | Details |
|---|---|---|
| 5f0 186 | Asn 186 | variant |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 36 |
| Total formula weight | 1338280.3 | |
| Non-Polymers* | Number of molecules | 145 |
| Total formula weight | 5551.2 | |
| All* | Total formula weight | 1343831.5 |
