8OIP

28S mammalian mitochondrial small ribosomal subunit with mtRF1 and P-site tRNA

This is a non-PDB format compatible entry.

Entity

Entity ID	Chain ID	Description	Type	Chain length	Formula weight	Number of molecules	DB Name (Accession)	Biological source	Descriptive keywords
1	BX	39S ribosomal protein L19, mitochondrial	polymer	303	34528.8	1	UniProt (I3LNJ0) Pfam (PF01245) In PDB	Sus scrofa (pig)	Mitochondrial ribosomal protein L19
2	Bd	bL31m	polymer	126	15156.5	1	UniProt (I3L9J0) Pfam (PF09776) UniProt (by SIFTS) (A0A4X1ULI6) In PDB	Sus scrofa (pig)
3	AA	12S rRNA	polymer	962	309087.3	1	GenBank (NC_012095.1)	Sus scrofa (pig)
4	AB	28S ribosomal protein S35, mitochondrial isoform 1	polymer	366	41357.8	1	UniProt (F1SG95) Pfam (PF10213) In PDB	Sus scrofa (pig)	Mitochondrial ribosomal protein S35
5	AC	Mitochondrial ribosomal protein S24	polymer	167	18935.2	1	UniProt (A0A287ANU4) Pfam (PF14955) In PDB	Sus scrofa (pig)
6	AD	Aurora kinase A interacting protein 1	polymer	199	22843.9	1	UniProt (A0A287B3R8) Pfam (PF08213) UniProt (by SIFTS) (A0A8D2A802) In PDB	Sus scrofa (pig)
7	AE	bS6m,Mitochondrial ribosomal protein S6	polymer	376	41085.4	1	UniProt (A0A4X1TSM9) Pfam (PF01250) In PDB	Sus scrofa
8	AF	Mitochondrial ribosomal protein S7	polymer	242	28150.9	1	UniProt (A0A286ZJ25) Pfam (PF00177) In PDB	Sus scrofa (pig)
9	AG	P-site Met-tRNA(fMet)	polymer	72	22823.7	1		Homo sapiens
10	AH	Mitochondrial ribosomal protein S10	polymer	200	23105.7	1	UniProt (F1RUU2) Pfam (PF00338) In PDB	Sus scrofa (pig)
11	AI	mRNA	polymer	9	2902.8	1		Homo sapiens
12	AJ	Mitochondrial ribosomal protein S12	polymer	139	15257.1	1	UniProt (A0A0M3KL52) Pfam (PF00164) In PDB	Sus scrofa (pig)	Mitoribosomal protein us12m,mrps12
13	AK	Mitochondrial ribosomal protein S14	polymer	128	15120.7	1	UniProt (A0A0M3KL53) Pfam (PF00253) In PDB	Sus scrofa (pig)	Mitoribosomal protein us14m,mrps14
14	AL	28S ribosomal protein S15, mitochondrial	polymer	259	29596.9	1	UniProt (A0A287AKS1) Pfam (PF00312) In PDB	Sus scrofa (pig)
15	AM	28S ribosomal protein S16, mitochondrial	polymer	135	15182.7	1	UniProt (A0A480JTD7) Pfam (PF00886) In PDB	Sus scrofa (pig)	Mitochondrial ribosomal protein S16
16	AN	uS17m	polymer	130	14452.0	1	UniProt (F1RIU0) Pfam (PF00366) UniProt (by SIFTS) (A0A8D1UDM1) In PDB	Sus scrofa (pig)
17	AO	28S ribosomal protein S18b, mitochondrial	polymer	258	29220.5	1	UniProt (Q767K8) Pfam (PF01084) In PDB	Sus scrofa (pig)	S18mt-b,28S ribosomal protein S18-2,mitochondrial,MRP-S18-2
18	AP	Mitochondrial ribosomal protein S18C	polymer	143	16211.1	1	UniProt (A0A0M3KL54) Pfam (PF01084) In PDB	Sus scrofa (pig)	Mitoribosomal protein bs18m,mrps18c
19	AQ	28S ribosomal protein S21, mitochondrial	polymer	87	10724.5	1	UniProt (A0A286ZNB3) Pfam (PF01165) In PDB	Sus scrofa (pig)
20	AR	Mitochondrial ribosomal protein S22	polymer	382	43234.6	1	UniProt (A0A287AQT5) Pfam (PF10245) In PDB	Sus scrofa (pig)
21	AS	mS23	polymer	190	21666.7	1	UniProt (A0A287AEW3) Pfam (PF10484) In PDB	Sus scrofa (pig)
22	AT	Mitochondrial ribosomal protein S25	polymer	173	19954.2	1	UniProt (A0A0M3KL55) Pfam (PF05047) In PDB	Sus scrofa (pig)	Mitoribosomal protein ms25,mrps25
23	AU	Mitochondrial ribosomal protein S26	polymer	205	23637.9	1	UniProt (A0A287AY01) In PDB	Sus scrofa (pig)
24	AV	Mitochondrial ribosomal protein S27	polymer	395	45761.8	1	UniProt (A0A5G2R1I0) Pfam (PF10037) In PDB	Sus scrofa (pig)
25	AW	Mitoribosomal protein ms28, mrps28	polymer	188	21014.9	1	UniProt (A0A0M3KL56) Pfam (PF10246) In PDB	Sus scrofa (pig)
26	AX	Death associated protein 3	polymer	410	46966.1	1	UniProt (I3LS10) Pfam (PF10236) UniProt (by SIFTS) (A0A8D1XNL0) In PDB	Sus scrofa (pig)
27	AY	28S ribosomal protein S31, mitochondrial	polymer	381	43516.5	1	UniProt (F1RME2) Pfam (PF15433) In PDB	Sus scrofa (pig)
28	AZ	Mitochondrial ribosomal protein S33	polymer	148	16971.7	1	UniProt (F1S8G3) Pfam (PF08293) UniProt (by SIFTS) (A0A4X1V2H3) In PDB	Sus scrofa (pig)
29	Aa	Peptide chain release factor 1, mitochondrial	polymer	474	55569.7	1	UniProt (O75570) Pfam (PF03462) Pfam (PF00472) In PDB	Homo sapiens (human)	MRF-1,MtRF-1
30	Ab	Mitochondrial ribosomal protein S2	polymer	289	31731.6	1	UniProt (F1S001) Pfam (PF00318) In PDB	Sus scrofa (pig)
31	Ac	Coiled-coil-helix-coiled-coil-helix domain containing 1	polymer	118	13603.9	1	UniProt (F1SU49) Pfam (PF06747) UniProt (by SIFTS) (A0A4X1SZV4) In PDB	Sus scrofa (pig)
32	Ad	28S ribosomal protein S5, mitochondrial isoform X2	polymer	430	48213.1	1	UniProt (F1SU66) Pfam (PF21251) Pfam (PF00333) Pfam (PF03719) In PDB	Sus scrofa (pig)	Mitochondrial ribosomal protein S5
33	Ae	mS39	polymer	692	78518.2	1	UniProt (K7GKS8) Pfam (PF22330) Pfam (PF13812) In PDB	Sus scrofa (pig)
34	Ag	uS9m	polymer	397	45604.6	1	UniProt (I3LU08) Pfam (PF00380) In PDB	Sus scrofa (pig)
35	Ai	Mitochondrial ribosomal protein S11	polymer	196	20856.9	1	UniProt (A0A286ZJJ6) Pfam (PF00411) In PDB	Sus scrofa (pig)
36	Aj	Mitochondrial ribosomal protein S34	polymer	505	55714.4	1	UniProt (A0A287AVS9) Pfam (PF16053) In PDB	Sus scrofa (pig)
37	AA, AD, AG, AI, AJ...	MAGNESIUM ION	non-polymer		24.3	127	Chemie (MG)
38	AA	SPERMINE	non-polymer		202.3	1	Chemie (SPM)
39	AA	SPERMIDINE	non-polymer		145.2	1	Chemie (SPD)
40	AA	POTASSIUM ION	non-polymer		39.1	11	Chemie (K)
41	AO	ZINC ION	non-polymer		65.4	1	Chemie (ZN)
42	AP, AT	FE-S-O HYBRID CLUSTER	non-polymer		335.5	2	Chemie (FS2)
43	AX	ADENOSINE-5'-TRIPHOSPHATE	non-polymer		507.2	1	Chemie (ATP)
44	AX	GUANOSINE-5'-DIPHOSPHATE	non-polymer		443.2	1	Chemie (GDP)
45		water	water		18.0	3	Chemie (HOH)

Sequence modifications

AE: -251 - -124 (PDB: 8OIP)
AE: -123 - 124 (UniProt: A0A4X1TSM9)

PDB	External Database	Details
Ser -22	Pro 129	conflict

Aa: 1 - 445 (UniProt: O75570)

PDB	External Database	Details
Gly 446	-	expression tag
Gly 447	-	expression tag
Ser 448	-	expression tag
Gly 449	-	expression tag
Gly 450	-	expression tag
Ser 451	-	expression tag
Gly 452	-	expression tag
Asp 453	-	expression tag
Tyr 454	-	expression tag
Lys 455	-	expression tag
Asp 456	-	expression tag
His 457	-	expression tag
Asp 458	-	expression tag
Gly 459	-	expression tag
Asp 460	-	expression tag
Tyr 461	-	expression tag
Lys 462	-	expression tag
Asp 463	-	expression tag
His 464	-	expression tag
Asp 465	-	expression tag
Ile 466	-	expression tag
Asp 467	-	expression tag
Tyr 468	-	expression tag
Lys 469	-	expression tag
Asp 470	-	expression tag
Asp 471	-	expression tag
Asp 472	-	expression tag
Asp 473	-	expression tag
Lys 474	-	expression tag

Ai: 1 - 196 (UniProt: A0A286ZJJ6)

PDB	External Database	Details
5f0 186	Asn 186	variant

Contents of the asymmetric unit

Polymers	Number of chains	36
	Total formula weight	1338280.3
Non-Polymers*	Number of molecules	145
	Total formula weight	5551.2
All*	Total formula weight	1343831.5

*Water molecules are not included.