8OIP
28S mammalian mitochondrial small ribosomal subunit with mtRF1 and P-site tRNA
This is a non-PDB format compatible entry.
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A (BX) | 39S ribosomal protein L19, mitochondrial | polymer | 303 | 34528.8 | 1 | UniProt (I3LNJ0) Pfam (PF01245) | Sus scrofa (pig) | Mitochondrial ribosomal protein L19 |
| 2 | B (Bd) | bL31m | polymer | 126 | 15156.5 | 1 | UniProt (I3L9J0) Pfam (PF09776) UniProt (by SIFTS) (A0A4X1ULI6) | Sus scrofa (pig) | |
| 3 | C (AA) | 12S rRNA | polymer | 962 | 309087.3 | 1 | GenBank (NC_012095.1) | Sus scrofa (pig) | |
| 4 | D (AB) | 28S ribosomal protein S35, mitochondrial isoform 1 | polymer | 366 | 41357.8 | 1 | UniProt (F1SG95) Pfam (PF10213) | Sus scrofa (pig) | Mitochondrial ribosomal protein S35 |
| 5 | E (AC) | Mitochondrial ribosomal protein S24 | polymer | 167 | 18935.2 | 1 | UniProt (A0A287ANU4) Pfam (PF14955) | Sus scrofa (pig) | |
| 6 | F (AD) | Aurora kinase A interacting protein 1 | polymer | 199 | 22843.9 | 1 | UniProt (A0A287B3R8) Pfam (PF08213) UniProt (by SIFTS) (A0A8D2A802) | Sus scrofa (pig) | |
| 7 | G (AE) | bS6m,Mitochondrial ribosomal protein S6 | polymer | 376 | 41085.4 | 1 | UniProt (A0A4X1TSM9) | Sus scrofa | |
| 8 | H (AF) | Mitochondrial ribosomal protein S7 | polymer | 242 | 28150.9 | 1 | UniProt (A0A286ZJ25) Pfam (PF00177) | Sus scrofa (pig) | |
| 9 | I (AG) | P-site Met-tRNA(fMet) | polymer | 72 | 22823.7 | 1 | Homo sapiens | ||
| 10 | J (AH) | Mitochondrial ribosomal protein S10 | polymer | 200 | 23105.7 | 1 | UniProt (F1RUU2) Pfam (PF00338) | Sus scrofa (pig) | |
| 11 | K (AI) | mRNA | polymer | 9 | 2902.8 | 1 | Homo sapiens | ||
| 12 | L (AJ) | Mitochondrial ribosomal protein S12 | polymer | 139 | 15257.1 | 1 | UniProt (A0A0M3KL52) | Sus scrofa (pig) | Mitoribosomal protein us12m,mrps12 |
| 13 | M (AK) | Mitochondrial ribosomal protein S14 | polymer | 128 | 15120.7 | 1 | UniProt (A0A0M3KL53) Pfam (PF00253) | Sus scrofa (pig) | Mitoribosomal protein us14m,mrps14 |
| 14 | N (AL) | 28S ribosomal protein S15, mitochondrial | polymer | 259 | 29596.9 | 1 | UniProt (A0A287AKS1) Pfam (PF00312) | Sus scrofa (pig) | |
| 15 | O (AM) | 28S ribosomal protein S16, mitochondrial | polymer | 135 | 15182.7 | 1 | UniProt (A0A480JTD7) | Sus scrofa (pig) | Mitochondrial ribosomal protein S16 |
| 16 | P (AN) | uS17m | polymer | 130 | 14452.0 | 1 | UniProt (F1RIU0) Pfam (PF00366) UniProt (by SIFTS) (A0A8D1UDM1) | Sus scrofa (pig) | |
| 17 | Q (AO) | 28S ribosomal protein S18b, mitochondrial | polymer | 258 | 29220.5 | 1 | UniProt (Q767K8) Pfam (PF01084) | Sus scrofa (pig) | S18mt-b,28S ribosomal protein S18-2,mitochondrial,MRP-S18-2 |
| 18 | R (AP) | Mitochondrial ribosomal protein S18C | polymer | 143 | 16211.1 | 1 | UniProt (A0A0M3KL54) Pfam (PF01084) | Sus scrofa (pig) | Mitoribosomal protein bs18m,mrps18c |
| 19 | S (AQ) | 28S ribosomal protein S21, mitochondrial | polymer | 87 | 10724.5 | 1 | UniProt (A0A286ZNB3) Pfam (PF01165) | Sus scrofa (pig) | |
| 20 | T (AR) | Mitochondrial ribosomal protein S22 | polymer | 382 | 43234.6 | 1 | UniProt (A0A287AQT5) Pfam (PF10245) | Sus scrofa (pig) | |
| 21 | U (AS) | mS23 | polymer | 190 | 21666.7 | 1 | UniProt (A0A287AEW3) Pfam (PF10484) | Sus scrofa (pig) | |
| 22 | V (AT) | Mitochondrial ribosomal protein S25 | polymer | 173 | 19954.2 | 1 | UniProt (A0A0M3KL55) Pfam (PF05047) | Sus scrofa (pig) | Mitoribosomal protein ms25,mrps25 |
| 23 | W (AU) | Mitochondrial ribosomal protein S26 | polymer | 205 | 23637.9 | 1 | UniProt (A0A287AY01) | Sus scrofa (pig) | |
| 24 | X (AV) | Mitochondrial ribosomal protein S27 | polymer | 395 | 45761.8 | 1 | UniProt (A0A5G2R1I0) Pfam (PF10037) | Sus scrofa (pig) | |
| 25 | Y (AW) | Mitoribosomal protein ms28, mrps28 | polymer | 188 | 21014.9 | 1 | UniProt (A0A0M3KL56) Pfam (PF10246) | Sus scrofa (pig) | |
| 26 | Z (AX) | Death associated protein 3 | polymer | 410 | 46966.1 | 1 | UniProt (I3LS10) Pfam (PF10236) UniProt (by SIFTS) (A0A8D1XNL0) | Sus scrofa (pig) | |
| 27 | AA (AY) | 28S ribosomal protein S31, mitochondrial | polymer | 381 | 43516.5 | 1 | UniProt (F1RME2) Pfam (PF15433) | Sus scrofa (pig) | |
| 28 | BA (AZ) | Mitochondrial ribosomal protein S33 | polymer | 148 | 16971.7 | 1 | UniProt (F1S8G3) Pfam (PF08293) UniProt (by SIFTS) (A0A4X1V2H3) | Sus scrofa (pig) | |
| 29 | CA (Aa) | Peptide chain release factor 1, mitochondrial | polymer | 474 | 55569.7 | 1 | UniProt (O75570) Pfam (PF03462) Pfam (PF00472) | Homo sapiens (human) | MRF-1,MtRF-1 |
| 30 | DA (Ab) | Mitochondrial ribosomal protein S2 | polymer | 289 | 31731.6 | 1 | UniProt (F1S001) Pfam (PF00318) | Sus scrofa (pig) | |
| 31 | EA (Ac) | Coiled-coil-helix-coiled-coil-helix domain containing 1 | polymer | 118 | 13603.9 | 1 | UniProt (F1SU49) Pfam (PF06747) UniProt (by SIFTS) (A0A4X1SZV4) | Sus scrofa (pig) | |
| 32 | FA (Ad) | 28S ribosomal protein S5, mitochondrial isoform X2 | polymer | 430 | 48213.1 | 1 | UniProt (F1SU66) Pfam (PF21251) Pfam (PF00333) Pfam (PF03719) | Sus scrofa (pig) | Mitochondrial ribosomal protein S5 |
| 33 | GA (Ae) | mS39 | polymer | 692 | 78518.2 | 1 | UniProt (K7GKS8) Pfam (PF22330) Pfam (PF13812) | Sus scrofa (pig) | |
| 34 | HA (Ag) | uS9m | polymer | 397 | 45604.6 | 1 | UniProt (I3LU08) Pfam (PF00380) | Sus scrofa (pig) | |
| 35 | IA (Ai) | Mitochondrial ribosomal protein S11 | polymer | 196 | 20856.9 | 1 | UniProt (A0A286ZJJ6) Pfam (PF00411) | Sus scrofa (pig) | |
| 36 | JA (Aj) | Mitochondrial ribosomal protein S34 | polymer | 505 | 55714.4 | 1 | UniProt (A0A287AVS9) Pfam (PF16053) | Sus scrofa (pig) | |
| 37 | AB, AC, AD, AE, BB... (AA, AD, AG, AI, AJ...) | MAGNESIUM ION | non-polymer | 24.3 | 127 | Chemie (MG) PubChem (888) | |||
| 38 | ZE (AA) | SPERMINE | non-polymer | 202.3 | 1 | Chemie (SPM) PubChem (1103) | |||
| 39 | AF (AA) | SPERMIDINE | non-polymer | 145.2 | 1 | Chemie (SPD) PubChem (1102) | |||
| 40 | BF, CF, DF, EF, FF... (AA) | POTASSIUM ION | non-polymer | 39.1 | 11 | Chemie (K) PubChem (813) | |||
| 41 | SF (AO) | ZINC ION | non-polymer | 65.4 | 1 | Chemie (ZN) | |||
| 42 | TF, UF (AP, AT) | FE-S-O HYBRID CLUSTER | non-polymer | 335.5 | 2 | Chemie (FS2) | |||
| 43 | VF (AX) | ADENOSINE-5'-TRIPHOSPHATE | non-polymer | 507.2 | 1 | Chemie (ATP) | |||
| 44 | XF (AX) | GUANOSINE-5'-DIPHOSPHATE | non-polymer | 443.2 | 1 | Chemie (GDP) PubChem (136073927) PubChem (135398619) PubChem (135402030) PubChem (135431654) PubChem (135566337) PubChem (135760556) PubChem (136026707) PubChem (136053418) PubChem (136663964) PubChem (136664748) PubChem (136759848) PubChem (136759849) PubChem (136759850) PubChem (136836636) PubChem (136847074) PubChem (172898537) | |||
| 45 | ZF (AX) | water | water | 18.0 | 3 | Chemie (HOH) |
Sequence modifications
AE: -251 - -124 (PDB: 8OIP)
AE: -123 - 124 (UniProt: A0A4X1TSM9)
Aa: 1 - 445 (UniProt: O75570)
Ai: 1 - 196 (UniProt: A0A286ZJJ6)
AE: -123 - 124 (UniProt: A0A4X1TSM9)
| PDB | External Database | Details |
|---|---|---|
| Ser -22 | Pro 129 | conflict |
| PDB | External Database | Details |
|---|---|---|
| Gly 446 | - | expression tag |
| Gly 447 | - | expression tag |
| Ser 448 | - | expression tag |
| Gly 449 | - | expression tag |
| Gly 450 | - | expression tag |
| Ser 451 | - | expression tag |
| Gly 452 | - | expression tag |
| Asp 453 | - | expression tag |
| Tyr 454 | - | expression tag |
| Lys 455 | - | expression tag |
| Asp 456 | - | expression tag |
| His 457 | - | expression tag |
| Asp 458 | - | expression tag |
| Gly 459 | - | expression tag |
| Asp 460 | - | expression tag |
| Tyr 461 | - | expression tag |
| Lys 462 | - | expression tag |
| Asp 463 | - | expression tag |
| His 464 | - | expression tag |
| Asp 465 | - | expression tag |
| Ile 466 | - | expression tag |
| Asp 467 | - | expression tag |
| Tyr 468 | - | expression tag |
| Lys 469 | - | expression tag |
| Asp 470 | - | expression tag |
| Asp 471 | - | expression tag |
| Asp 472 | - | expression tag |
| Asp 473 | - | expression tag |
| Lys 474 | - | expression tag |
| PDB | External Database | Details |
|---|---|---|
| 5f0 186 | Asn 186 | variant |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 36 |
| Total formula weight | 1338280.3 | |
| Non-Polymers* | Number of molecules | 145 |
| Total formula weight | 5551.2 | |
| All* | Total formula weight | 1343831.5 |
