Summary Structural details Experimental details Functional details Sequence Neighbor History Downloads

8OIP

28S mammalian mitochondrial small ribosomal subunit with mtRF1 and P-site tRNA

This is a non-PDB format compatible entry.

Functional Information from GO Data

Chain	GOid	namespace	contents
AB	0003735	molecular_function	structural constituent of ribosome
AB	0005739	cellular_component	mitochondrion
AB	0005840	cellular_component	ribosome
AB	0032543	biological_process	mitochondrial translation
AC	0005739	cellular_component	mitochondrion
AC	0005840	cellular_component	ribosome
AC	1990904	cellular_component	ribonucleoprotein complex
AD	0005634	cellular_component	nucleus
AD	0005654	cellular_component	nucleoplasm
AD	0005739	cellular_component	mitochondrion
AD	0005759	cellular_component	mitochondrial matrix
AD	0045862	biological_process	positive regulation of proteolysis
AE	0003735	molecular_function	structural constituent of ribosome
AE	0005739	cellular_component	mitochondrion
AE	0005743	cellular_component	mitochondrial inner membrane
AE	0005763	cellular_component	mitochondrial small ribosomal subunit
AE	0005840	cellular_component	ribosome
AE	0006412	biological_process	translation
AE	0019843	molecular_function	rRNA binding
AE	1990904	cellular_component	ribonucleoprotein complex
AF	0003729	molecular_function	mRNA binding
AF	0003735	molecular_function	structural constituent of ribosome
AF	0005739	cellular_component	mitochondrion
AF	0005743	cellular_component	mitochondrial inner membrane
AF	0005763	cellular_component	mitochondrial small ribosomal subunit
AF	0005840	cellular_component	ribosome
AF	0006412	biological_process	translation
AF	0019843	molecular_function	rRNA binding
AF	1990904	cellular_component	ribonucleoprotein complex
AH	0005739	cellular_component	mitochondrion
AH	0005763	cellular_component	mitochondrial small ribosomal subunit
AH	0005840	cellular_component	ribosome
AH	1990904	cellular_component	ribonucleoprotein complex
AJ	0003735	molecular_function	structural constituent of ribosome
AJ	0005739	cellular_component	mitochondrion
AJ	0005763	cellular_component	mitochondrial small ribosomal subunit
AJ	0005840	cellular_component	ribosome
AJ	0006412	biological_process	translation
AJ	0015935	cellular_component	small ribosomal subunit
AJ	1990904	cellular_component	ribonucleoprotein complex
AK	0003735	molecular_function	structural constituent of ribosome
AK	0005737	cellular_component	cytoplasm
AK	0005840	cellular_component	ribosome
AK	0006412	biological_process	translation
AK	1990904	cellular_component	ribonucleoprotein complex
AL	0003735	molecular_function	structural constituent of ribosome
AL	0005739	cellular_component	mitochondrion
AL	0005761	cellular_component	mitochondrial ribosome
AL	0005840	cellular_component	ribosome
AL	0006412	biological_process	translation
AL	1990904	cellular_component	ribonucleoprotein complex
AM	0003735	molecular_function	structural constituent of ribosome
AM	0005739	cellular_component	mitochondrion
AM	0005743	cellular_component	mitochondrial inner membrane
AM	0005763	cellular_component	mitochondrial small ribosomal subunit
AM	0005840	cellular_component	ribosome
AM	0006412	biological_process	translation
AM	1990904	cellular_component	ribonucleoprotein complex
AN	0003723	molecular_function	RNA binding
AN	0003735	molecular_function	structural constituent of ribosome
AN	0005739	cellular_component	mitochondrion
AN	0005743	cellular_component	mitochondrial inner membrane
AN	0005763	cellular_component	mitochondrial small ribosomal subunit
AN	0005840	cellular_component	ribosome
AN	0006412	biological_process	translation
AN	0019843	molecular_function	rRNA binding
AN	1990904	cellular_component	ribonucleoprotein complex
AO	0003735	molecular_function	structural constituent of ribosome
AO	0005654	cellular_component	nucleoplasm
AO	0005739	cellular_component	mitochondrion
AO	0005763	cellular_component	mitochondrial small ribosomal subunit
AO	0005840	cellular_component	ribosome
AO	0006412	biological_process	translation
AO	0030054	cellular_component	cell junction
AO	0032543	biological_process	mitochondrial translation
AO	1990904	cellular_component	ribonucleoprotein complex
AP	0003735	molecular_function	structural constituent of ribosome
AP	0005739	cellular_component	mitochondrion
AP	0005743	cellular_component	mitochondrial inner membrane
AP	0005763	cellular_component	mitochondrial small ribosomal subunit
AP	0005840	cellular_component	ribosome
AP	0006412	biological_process	translation
AP	0070181	molecular_function	small ribosomal subunit rRNA binding
AP	1990904	cellular_component	ribonucleoprotein complex
AQ	0003735	molecular_function	structural constituent of ribosome
AQ	0005840	cellular_component	ribosome
AQ	0006412	biological_process	translation
AQ	1990904	cellular_component	ribonucleoprotein complex
AR	0003735	molecular_function	structural constituent of ribosome
AR	0005739	cellular_component	mitochondrion
AR	0005763	cellular_component	mitochondrial small ribosomal subunit
AS	0003735	molecular_function	structural constituent of ribosome
AS	0005739	cellular_component	mitochondrion
AS	0005840	cellular_component	ribosome
AS	0006412	biological_process	translation
AS	0031965	cellular_component	nuclear membrane
AT	0003735	molecular_function	structural constituent of ribosome
AT	0005739	cellular_component	mitochondrion
AT	0005743	cellular_component	mitochondrial inner membrane
AT	0005840	cellular_component	ribosome
AT	1990904	cellular_component	ribonucleoprotein complex
AU	0005763	cellular_component	mitochondrial small ribosomal subunit
AV	0000049	molecular_function	tRNA binding
AV	0003723	molecular_function	RNA binding
AV	0005737	cellular_component	cytoplasm
AV	0005739	cellular_component	mitochondrion
AV	0005743	cellular_component	mitochondrial inner membrane
AV	0005763	cellular_component	mitochondrial small ribosomal subunit
AV	0005840	cellular_component	ribosome
AV	0006417	biological_process	regulation of translation
AV	0019843	molecular_function	rRNA binding
AV	1990904	cellular_component	ribonucleoprotein complex
AW	0005739	cellular_component	mitochondrion
AW	0005763	cellular_component	mitochondrial small ribosomal subunit
AW	0005840	cellular_component	ribosome
AW	0032543	biological_process	mitochondrial translation
AX	0003735	molecular_function	structural constituent of ribosome
AX	0003924	molecular_function	GTPase activity
AX	0005654	cellular_component	nucleoplasm
AX	0005739	cellular_component	mitochondrion
AX	0005759	cellular_component	mitochondrial matrix
AX	0005761	cellular_component	mitochondrial ribosome
AX	0005840	cellular_component	ribosome
AX	0006915	biological_process	apoptotic process
AX	0008637	biological_process	apoptotic mitochondrial changes
AX	0015935	cellular_component	small ribosomal subunit
AX	0032543	biological_process	mitochondrial translation
AX	1990904	cellular_component	ribonucleoprotein complex
AY	0003735	molecular_function	structural constituent of ribosome
AY	0005739	cellular_component	mitochondrion
AY	0005763	cellular_component	mitochondrial small ribosomal subunit
AY	0005840	cellular_component	ribosome
AY	1990904	cellular_component	ribonucleoprotein complex
AZ	0005739	cellular_component	mitochondrion
AZ	0005840	cellular_component	ribosome
AZ	1990904	cellular_component	ribonucleoprotein complex
Aa	0003747	molecular_function	translation release factor activity
Aa	0005737	cellular_component	cytoplasm
Aa	0005739	cellular_component	mitochondrion
Aa	0005759	cellular_component	mitochondrial matrix
Aa	0006412	biological_process	translation
Aa	0006415	biological_process	translational termination
Aa	0016149	molecular_function	translation release factor activity, codon specific
Aa	0070126	biological_process	mitochondrial translational termination
Ab	0003735	molecular_function	structural constituent of ribosome
Ab	0005739	cellular_component	mitochondrion
Ab	0005743	cellular_component	mitochondrial inner membrane
Ab	0005763	cellular_component	mitochondrial small ribosomal subunit
Ab	0005840	cellular_component	ribosome
Ab	0006412	biological_process	translation
Ab	0015935	cellular_component	small ribosomal subunit
Ab	0061668	biological_process	mitochondrial ribosome assembly
Ab	1990904	cellular_component	ribonucleoprotein complex
Ac	0005739	cellular_component	mitochondrion
Ac	0005761	cellular_component	mitochondrial ribosome
Ac	0032543	biological_process	mitochondrial translation
Ad	0003723	molecular_function	RNA binding
Ad	0003735	molecular_function	structural constituent of ribosome
Ad	0005739	cellular_component	mitochondrion
Ad	0005743	cellular_component	mitochondrial inner membrane
Ad	0005763	cellular_component	mitochondrial small ribosomal subunit
Ad	0005840	cellular_component	ribosome
Ad	0006412	biological_process	translation
Ad	1990904	cellular_component	ribonucleoprotein complex
Ae	0005739	cellular_component	mitochondrion
Ae	0019843	molecular_function	rRNA binding
Ae	0032543	biological_process	mitochondrial translation
Ae	0043024	molecular_function	ribosomal small subunit binding
Ag	0003723	molecular_function	RNA binding
Ag	0003735	molecular_function	structural constituent of ribosome
Ag	0005730	cellular_component	nucleolus
Ag	0005739	cellular_component	mitochondrion
Ag	0005743	cellular_component	mitochondrial inner membrane
Ag	0005763	cellular_component	mitochondrial small ribosomal subunit
Ag	0005840	cellular_component	ribosome
Ag	0006412	biological_process	translation
Ag	0070013	cellular_component	intracellular organelle lumen
Ag	1990904	cellular_component	ribonucleoprotein complex
Ai	0003735	molecular_function	structural constituent of ribosome
Ai	0005739	cellular_component	mitochondrion
Ai	0005743	cellular_component	mitochondrial inner membrane
Ai	0005763	cellular_component	mitochondrial small ribosomal subunit
Ai	0005840	cellular_component	ribosome
Ai	0006412	biological_process	translation
Ai	1990904	cellular_component	ribonucleoprotein complex
Aj	0003735	molecular_function	structural constituent of ribosome
Aj	0005739	cellular_component	mitochondrion
Aj	0005763	cellular_component	mitochondrial small ribosomal subunit
Aj	0032543	biological_process	mitochondrial translation
BX	0003735	molecular_function	structural constituent of ribosome
BX	0005739	cellular_component	mitochondrion
BX	0005840	cellular_component	ribosome
BX	0006412	biological_process	translation
BX	0031090	cellular_component	organelle membrane
BX	1990904	cellular_component	ribonucleoprotein complex
Bd	0003735	molecular_function	structural constituent of ribosome
Bd	0005739	cellular_component	mitochondrion
Bd	0005762	cellular_component	mitochondrial large ribosomal subunit
Bd	0006412	biological_process	translation

Functional Information from PROSITE/UniProt

site_id	PS00055
Number of Residues	8
Details	RIBOSOMAL_S12 Ribosomal protein S12 signature. KkPNSAnR

Chain	Residue	Details
AJ	LYS71-ARG78

site_id	PS00057
Number of Residues	25
Details	RIBOSOMAL_S18 Ribosomal protein S18 signature. VDYkn.VqlLsqFISPftGCIygrHI

Chain	Residue	Details
AP	VAL73-ILE97

site_id	PS00360
Number of Residues	19
Details	RIBOSOMAL_S9 Ribosomal protein S9 signature. GGGrsAQagAvrlAmARAL

Chain	Residue	Details
Ag	GLY335-LEU353

site_id	PS00585
Number of Residues	33
Details	RIBOSOMAL_S5 Ribosomal protein S5 signature. GRkrsVrVlvAVGNgk.GaAGfAigkat.ERad.AF

Chain	Residue	Details
Ad	GLY236-PHE268

site_id	PS00745
Number of Residues	17
Details	RF_PROK_I Prokaryotic-type class I peptide chain release factors signature. RAkGaGGQHVNktdSAV

Chain	Residue	Details
Aa	ARG306-VAL322

site_id	PS00962
Number of Residues	12
Details	RIBOSOMAL_S2_1 Ribosomal protein S2 signature 1. VrSLFDARVHLG

Chain	Residue	Details
Ab	VAL80-GLY91

Functional Information from SwissProt/UniProt

site_id	SWS_FT_FI5
Number of Residues	1
Details	Modified residue: {"description":"Phosphoserine","evidences":[{"source":"UniProtKB","id":"Q9Y676","evidenceCode":"ECO:0000250"}]}

Chain

Residue

Details

site_id	SWS_FT_FI11
Number of Residues	64
Details	Region: {"description":"GGQ domain","evidences":[{"source":"UniProtKB","id":"Q80VP5","evidenceCode":"ECO:0000250"}]}

Chain

Residue

Details

site_id	SWS_FT_FI12
Number of Residues	2
Details	Motif: {"description":"GGQ","evidences":[{"source":"PubMed","id":"37141370","evidenceCode":"ECO:0000269"}]}

Chain

Residue

Details

site_id	SWS_FT_FI13
Number of Residues	1
Details	Modified residue: {"description":"N5-methylglutamine","evidences":[{"source":"PubMed","id":"35260756","evidenceCode":"ECO:0000269"}]}

Chain

Residue

Details

		Sequence (fasta)
		PDBx/mmCIF
		PDBML format (no-atom)
		Validation report (PDF)