8OH6
Crystal structure of the Candida albicans 80S ribosome in complex with Paromomycin (500umol)
This is a non-PDB format compatible entry.
Entity
Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
1 | 1, AS | 25S (gene name XR_002086444.1) | polymer | 3359 | 1085278.1 | 2 | GenBank (XR_002086444.1) | Candida albicans | |
2 | 3, AT | 5S | polymer | 121 | 38943.1 | 2 | GenBank (X16634.1) | Candida albicans | |
3 | 4, AU | 5.8S | polymer | 158 | 50683.9 | 2 | GenBank (OQ195134.1) | Candida albicans | |
4 | j, AW | 60S ribosomal protein L2-B | polymer | 254 | 27366.6 | 2 | UniProt (A0A8H6F1X9) Pfam (PF00181) Pfam (PF03947) In PDB | Candida albicans | |
5 | k, AX | 60S ribosomal protein L3 | polymer | 389 | 44040.8 | 2 | UniProt (Q59LS1) Pfam (PF00297) In PDB | Candida albicans | |
6 | l, AY | 60S ribosomal protein L4-B | polymer | 363 | 39282.4 | 2 | UniProt (A0A8H6F4H4) Pfam (PF00573) Pfam (PF14374) In PDB | Candida albicans | |
7 | m, AZ | Uncharacterized protein CaJ7.0206 | polymer | 298 | 34558.0 | 2 | UniProt (G1UAA6) Pfam (PF17144) Pfam (PF14204) In PDB | Candida albicans | |
8 | n, BA | 60S ribosomal protein L6 | polymer | 176 | 19798.0 | 2 | UniProt (Q9P834) Pfam (PF01159) In PDB | Candida albicans | |
9 | o, BB | 60S ribosomal protein L7-A | polymer | 241 | 27447.0 | 2 | UniProt (A0A8H6BVN2) Pfam (PF08079) Pfam (PF00327) In PDB | Candida albicans | |
10 | p, BC | 60S ribosomal protein L8 | polymer | 262 | 28549.4 | 2 | UniProt (A0A8H6C337) Pfam (PF01248) In PDB | Candida albicans | |
11 | q, BD | 60S ribosomal protein L9-B | polymer | 191 | 21755.2 | 2 | UniProt (A0A8H6C3N3) Pfam (PF00347) In PDB | Candida albicans | |
12 | r, BE | 60S ribosomal protein L10 | polymer | 220 | 25236.3 | 2 | UniProt (Q5AIB8) Pfam (PF00252) In PDB | Candida albicans | |
13 | s, BF | 60S ribosomal protein L11-B | polymer | 174 | 19859.8 | 2 | UniProt (A0A8H6F1S5) Pfam (PF00281) Pfam (PF00673) In PDB | Candida albicans | |
14 | t, BG | 60S ribosomal protein L13 | polymer | 202 | 23105.8 | 2 | UniProt (A0A8H6F5V7) Pfam (PF01294) In PDB | Candida albicans | |
15 | u, BH | 60S ribosomal protein L14-B | polymer | 131 | 14748.5 | 2 | UniProt (A0A8H6F332) Pfam (PF01929) In PDB | Candida albicans | |
16 | v, BI | 60S ribosomal protein L15-A | polymer | 204 | 24389.3 | 2 | UniProt (Q5A6R1) Pfam (PF00827) In PDB | Candida albicans | |
17 | w, BJ | Ribosomal protein L13 | polymer | 200 | 22685.8 | 2 | UniProt (A0A8H6BZ56) Pfam (PF00572) In PDB | Candida albicans | |
18 | x, BK | Ribosomal protein L22 | polymer | 185 | 21002.9 | 2 | UniProt (A0A8H6BUG0) Pfam (PF00237) In PDB | Candida albicans | |
19 | y, BL | 60S ribosomal protein L18-A | polymer | 186 | 20817.4 | 2 | UniProt (A0A8H6C4Y1) Pfam (PF17135) In PDB | Candida albicans | |
20 | z, BM | 60S ribosomal protein L19-A | polymer | 190 | 21942.8 | 2 | UniProt (A0A1D8PK40) Pfam (PF01280) In PDB | Candida albicans | |
21 | 0, BN | 60S ribosomal protein L20 | polymer | 172 | 20376.9 | 2 | UniProt (A0A8H6BZJ3) Pfam (PF01775) In PDB | Candida albicans | |
22 | 2, BO | 60S ribosomal protein L21-A | polymer | 160 | 18049.9 | 2 | UniProt (A0A8H6F1C8) Pfam (PF01157) In PDB | Candida albicans | |
23 | 5, BP | 60S ribosomal protein L22-B | polymer | 124 | 14107.9 | 2 | UniProt (A0A1D8PM41) Pfam (PF01776) In PDB | Candida albicans | |
24 | 6, BQ | 60S ribosomal protein L23-A | polymer | 137 | 14495.0 | 2 | UniProt (A0A8H6C444) Pfam (PF00238) In PDB | Candida albicans | |
25 | 7, BR | 60S ribosomal protein L24-A | polymer | 155 | 17430.3 | 2 | UniProt (A0A8H6C4U1) Pfam (PF01246) In PDB | Candida albicans | |
26 | 8, BS | 60S ribosomal protein L25 | polymer | 142 | 15873.6 | 2 | UniProt (A0A8H6F6A1) Pfam (PF03939) Pfam (PF00276) In PDB | Candida albicans | |
27 | 9, BT | Ribosomal protein L24 | polymer | 127 | 14215.5 | 2 | UniProt (A0A8H6F3X2) Pfam (PF16906) In PDB | Candida albicans | |
28 | AA, BU | 60S ribosomal protein L27 | polymer | 136 | 15551.4 | 2 | UniProt (Q9P843) Pfam (PF01777) In PDB | Candida albicans | |
29 | AB, BV | 60S ribosomal protein L28 | polymer | 149 | 16703.4 | 2 | UniProt (A0A8H6BVY8) Pfam (PF00828) In PDB | Candida albicans | |
30 | AC, BW | 60S ribosomal protein L29 | polymer | 63 | 7135.3 | 2 | UniProt (A0A8H6F0G8) Pfam (PF01779) In PDB | Candida albicans | |
31 | AD, BX | 60S ribosomal protein L30 | polymer | 106 | 11520.4 | 2 | UniProt (A0A1D8PM75) Pfam (PF01248) In PDB | Candida albicans | |
32 | AE, BY | 60S ribosomal protein L31-B | polymer | 112 | 12993.1 | 2 | UniProt (A0A8H6F1M1) Pfam (PF01198) In PDB | Candida albicans | |
33 | AF, BZ | 60S ribosomal protein L32 | polymer | 131 | 14993.7 | 2 | UniProt (O94008) Pfam (PF01655) In PDB | Candida albicans | |
34 | AG, CA | 60S ribosomal protein L33-A | polymer | 107 | 12138.2 | 2 | UniProt (A0A8H6BW57) Pfam (PF01247) In PDB | Candida albicans | |
35 | AH, CB | 60S ribosomal protein L34-B | polymer | 122 | 13774.3 | 2 | UniProt (A0A8H6F171) Pfam (PF01199) In PDB | Candida albicans | |
36 | AI, CC | Ribosomal protein L29 | polymer | 120 | 14118.8 | 2 | UniProt (A0A8H6F6B7) Pfam (PF00831) In PDB | Candida albicans | |
37 | AJ, CD | 60S ribosomal protein L36 | polymer | 99 | 11096.2 | 2 | UniProt (P47834) Pfam (PF01158) In PDB | Candida albicans | L39 |
38 | AK, CE | 60S ribosomal protein L37-B | polymer | 90 | 10102.8 | 2 | UniProt (A0A1D8PF45) Pfam (PF01907) In PDB | Candida albicans | |
39 | AL, CF | 60S ribosomal protein L38 | polymer | 78 | 8911.5 | 2 | UniProt (A0A1D8PG16) Pfam (PF01781) In PDB | Candida albicans | |
40 | AM, CG | 60S ribosomal protein L39 | polymer | 51 | 6347.5 | 2 | UniProt (Q96W55) Pfam (PF00832) In PDB | Candida albicans | L46 |
41 | AN, CH | 60S ribosomal protein L40-B | polymer | 52 | 6078.4 | 2 | UniProt (A0A1D8PL68) Pfam (PF01020) In PDB | Candida albicans | |
42 | AO, CI | 60S ribosomal protein L41 | polymer | 25 | 3396.3 | 2 | UniProt (P9WER7) Pfam (PF05162) In PDB | Candida albicans | |
43 | AP, CJ | 60S ribosomal protein L42-B | polymer | 106 | 12259.6 | 2 | UniProt (A0A8H6BR69) Pfam (PF00935) In PDB | Candida albicans | |
44 | AQ, CK | 60S ribosomal protein L43-A | polymer | 92 | 10136.8 | 2 | UniProt (A0A1D8PP14) Pfam (PF01780) In PDB | Candida albicans | |
45 | i, CL | 60S ribosomal protein CAALFM_C304810CA | polymer | 267 | 29126.1 | 2 | UniProt (A0A1D8PK71) Pfam (PF09598) In PDB | Candida albicans | |
46 | B, CM | 18S | polymer | 1787 | 575838.6 | 2 | GenBank (XR_002086442.1) | Candida albicans | |
47 | C, CN | 40S ribosomal protein S0 | polymer | 261 | 28759.3 | 2 | UniProt (A0A8H6C395) Pfam (PF00318) In PDB | Candida albicans | |
48 | D, CO | 40S ribosomal protein S1 | polymer | 256 | 29041.9 | 2 | UniProt (A0A8H6C387) Pfam (PF01015) In PDB | Candida albicans | |
49 | E, CP | Ribosomal protein S5 | polymer | 249 | 26917.3 | 2 | UniProt (A0A8H6BZ90) Pfam (PF00333) Pfam (PF03719) In PDB | Candida albicans | |
50 | F, CQ | Ribosomal protein S3 | polymer | 251 | 27313.6 | 2 | UniProt (A0A8H6BYS1) Pfam (PF07650) Pfam (PF00189) In PDB | Candida albicans | |
51 | G, CR | 40S ribosomal protein S4 | polymer | 262 | 29435.4 | 2 | UniProt (A0A1D8PCI6) Pfam (PF08071) Pfam (PF01479) Pfam (PF00900) Pfam (PF00467) Pfam (PF16121) In PDB | Candida albicans | |
52 | H, CS | Ribosomal protein S7 | polymer | 225 | 25319.9 | 2 | UniProt (A0A8H6BS29) Pfam (PF00177) In PDB | Candida albicans | |
53 | I, CT | 40S ribosomal protein S6 | polymer | 236 | 27146.5 | 2 | UniProt (A0A8H6BZ37) Pfam (PF01092) In PDB | Candida albicans | |
54 | J, CU | 40S ribosomal protein S7 | polymer | 186 | 21285.8 | 2 | UniProt (A0A8H6C655) Pfam (PF01251) In PDB | Candida albicans | |
55 | K, CV | 40S ribosomal protein S8 | polymer | 206 | 22802.0 | 2 | UniProt (A0A8H6F0S0) Pfam (PF01201) In PDB | Candida albicans | |
56 | L, CW | Ribosomal protein S4 | polymer | 189 | 21765.1 | 2 | UniProt (A0A8H6F1X2) Pfam (PF00163) Pfam (PF01479) In PDB | Candida albicans | |
57 | M, CX | 40S ribosomal protein S10-A | polymer | 118 | 13836.8 | 2 | UniProt (A0A8H6BWQ8) Pfam (PF03501) In PDB | Candida albicans | |
58 | N, CY | 40S ribosomal protein S11A | polymer | 155 | 17638.6 | 2 | UniProt (A0A1D8PN83) Pfam (PF16205) Pfam (PF00366) In PDB | Candida albicans | |
59 | O, CZ | 40S ribosomal protein S12 | polymer | 143 | 15715.9 | 2 | UniProt (A0A8H6C3A1) Pfam (PF01248) In PDB | Candida albicans | |
60 | P, DA | 40S ribosomal protein S13 | polymer | 151 | 16976.8 | 2 | UniProt (A0A8H6F4G0) Pfam (PF08069) Pfam (PF00312) In PDB | Candida albicans | |
61 | Q, DB | 40S ribosomal protein S14-A | polymer | 132 | 14052.1 | 2 | UniProt (A0A8H6F0V4) Pfam (PF00411) In PDB | Candida albicans | |
62 | R, DC | 40S ribosomal protein S15 | polymer | 142 | 15967.8 | 2 | UniProt (A0A1D8PK22) Pfam (PF00203) In PDB | Candida albicans | |
63 | S, DD | 40S ribosomal protein S16 | polymer | 142 | 15769.5 | 2 | UniProt (O94017) Pfam (PF00380) In PDB | Candida albicans | |
64 | T, DE | 40S ribosomal protein S17-B | polymer | 137 | 15770.3 | 2 | UniProt (A0A8H6BTR7) Pfam (PF00833) In PDB | Candida albicans | |
65 | U, DF | 40S ribosomal protein S18-B | polymer | 145 | 17023.8 | 2 | UniProt (A0A8H6F3Y8) Pfam (PF00416) In PDB | Candida albicans | |
66 | V, DG | 40S ribosomal protein S19-A | polymer | 145 | 16097.2 | 2 | UniProt (A0A8H6C5L4) Pfam (PF01090) In PDB | Candida albicans | |
67 | W, DH | Ribosomal protein S10 | polymer | 119 | 13366.5 | 2 | UniProt (A0A8H6BYJ9) Pfam (PF00338) In PDB | Candida albicans | |
68 | X, DI | 40S ribosomal protein S21 | polymer | 87 | 9652.8 | 2 | UniProt (Q9P844) Pfam (PF01249) In PDB | Candida albicans | |
69 | Y, DJ | 40S ribosomal protein S22-A | polymer | 130 | 14807.2 | 2 | UniProt (A0A8H6F0N4) Pfam (PF00410) In PDB | Candida albicans | |
70 | Z, DK | Ribosomal protein S23 (S12) | polymer | 145 | 16000.8 | 2 | UniProt (A0A8H6F0V0) Pfam (PF00164) In PDB | Candida albicans | |
71 | a, DL | 40S ribosomal protein S24 | polymer | 135 | 15546.9 | 2 | UniProt (A0A8H6C3K1) Pfam (PF01282) In PDB | Candida albicans | |
72 | b, DM | 40S ribosomal protein S25 | polymer | 105 | 11633.8 | 2 | UniProt (A0A8H6EZQ8) Pfam (PF03297) In PDB | Candida albicans | |
73 | c, DN | 40S ribosomal protein S26 | polymer | 119 | 13606.1 | 2 | UniProt (A0A8H6BTS1) Pfam (PF01283) In PDB | Candida albicans | |
74 | d, DO | 40S ribosomal protein S27 | polymer | 82 | 8982.5 | 2 | UniProt (A0A8H6BWE6) Pfam (PF01667) In PDB | Candida albicans | |
75 | e, DP | 40S ribosomal protein S28-B | polymer | 67 | 7536.8 | 2 | UniProt (A0A8H6C0A5) Pfam (PF01200) In PDB | Candida albicans | |
76 | f, DQ | 40S ribosomal protein S29A | polymer | 56 | 6615.6 | 2 | UniProt (A0A1D8PTR4) Pfam (PF00253) In PDB | Candida albicans | |
77 | g, DR | 40S ribosomal protein S30 | polymer | 63 | 7127.4 | 2 | UniProt (A0A1D8PSK2) Pfam (PF04758) In PDB | Candida albicans | |
78 | h, DS | Ubiquitin-40S ribosomal protein S31 fusion protein | polymer | 193 | 22615.5 | 2 | UniProt (Q5A109) Pfam (PF00240) Pfam (PF01599) In PDB | Candida albicans | |
79 | AR, DT | Guanine nucleotide-binding protein subunit beta-like protein | polymer | 317 | 34593.9 | 2 | UniProt (A0A8H6C3E7) Pfam (PF00400) In PDB | Candida albicans | |
80 | l1 | Ribosomal protein | polymer | 217 | 24416.7 | 1 | UniProt (A0A8H6F4E7) Pfam (PF00687) In PDB | Candida albicans | |
81 | 12 | 60S ribosomal protein L12-A | polymer | 165 | 17791.5 | 1 | UniProt (A0A8H6C5X8) Pfam (PF03946) Pfam (PF00298) In PDB | Candida albicans | |
82 | 1, AS, 3, AU, B... | MAGNESIUM ION | non-polymer | 24.3 | 1390 | Chemie (MG) | |||
83 | CM, AS, 4, 1, B | PAROMOMYCIN | non-polymer | 615.6 | 21 | Chemie (PAR) | |||
84 | 1, AS | 3-O-acetyl-2-O-(3-O-acetyl-6-deoxy-beta-D-glucopyranosyl)-6-deoxy-1-O-{[(2R,2'S,3a'R,4''S,5''R,6'S,7a'S)-5''-methyl-4''-{[(2E)-3-phenylprop-2-enoyl]oxy}decahydrodispiro[oxirane-2,3'-[1]benzofuran-2',2''-pyran]-6'-yl]carbonyl}-beta-D-glucopyranose | non-polymer | 804.8 | 2 | Chemie (3K5) | |||
85 | AH, DN, DQ, AK, DS... | ZINC ION | non-polymer | 65.4 | 16 | Chemie (ZN) |
Sequence viewer
Contents of the asymmetric unit
Polymers | Number of chains | 160 |
Total formula weight | 6280176.5 | |
Non-Polymers* | Number of molecules | 1429 |
Total formula weight | 49368.3 | |
All* | Total formula weight | 6329544.9 |