8OH6
Crystal structure of the Candida albicans 80S ribosome in complex with Paromomycin (500umol)
This is a non-PDB format compatible entry.
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SLS BEAMLINE X06SA |
Synchrotron site | SLS |
Beamline | X06SA |
Temperature [K] | 173 |
Detector technology | PIXEL |
Collection date | 2022-04-10 |
Detector | DECTRIS EIGER X 16M |
Wavelength(s) | 1.0 |
Spacegroup name | P 1 21 1 |
Unit cell lengths | 296.890, 293.380, 443.000 |
Unit cell angles | 90.00, 99.39, 90.00 |
Refinement procedure
Resolution | 175.260 - 3.350 |
R-factor | 0.2844 |
Rwork | 0.284 |
R-free | 0.32760 |
Structure solution method | SAD |
RMSD bond length | 0.003 |
RMSD bond angle | 0.768 |
Data reduction software | XDS |
Data scaling software | XSCALE |
Phasing software | PHENIX |
Refinement software | PHENIX ((1.19rc4_4035: ???)) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 175.300 | 175.300 | 3.150 |
High resolution limit [Å] | 3.100 | 50.000 | 3.100 |
Rmerge | 1.155 | 0.056 | 2.728 |
Rmeas | 1.197 | 0.058 | 2.825 |
Rpim | 0.312 | ||
Number of reflections | 1341596 | 275 | 63014 |
<I/σ(I)> | 2.64 | ||
Completeness [%] | 99.5 | ||
Redundancy | 14.5 | ||
CC(1/2) | 0.981 | 0.999 | 0.030 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 7 | 277.15 | PEG 20K, KSCN, Mg Acetate, K - acetate, Bis-Tris-Acetate, Glycerol, Spermidine, phyllanthoside |