8KHV
The crystal structure of glycosaminoglycan lyase GAGase II
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A (A) | Heparinase II/III-like protein | polymer | 614 | 68455.4 | 1 | UniProt (A0A286FIB6) Pfam (PF07940) | Spirosoma fluviale | |
| 2 | B (A) | MANGANESE (II) ION | non-polymer | 54.9 | 1 | Chemie (MN) | |||
| 3 | C, D, E (A) | CALCIUM ION | non-polymer | 40.1 | 3 | Chemie (CA) | |||
| 4 | F (A) | water | water | 18.0 | 644 | Chemie (HOH) |
Sequence modifications
A: 24 - 628 (UniProt: A0A286FIB6)
| PDB | External Database | Details |
|---|---|---|
| Met 23 | - | initiating methionine |
| Leu 629 | - | expression tag |
| Glu 630 | - | expression tag |
| His 631 | - | expression tag |
| His 632 | - | expression tag |
| His 633 | - | expression tag |
| His 634 | - | expression tag |
| His 635 | - | expression tag |
| His 636 | - | expression tag |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 1 |
| Total formula weight | 68455.4 | |
| Non-Polymers* | Number of molecules | 4 |
| Total formula weight | 175.2 | |
| All* | Total formula weight | 68630.5 |
