8KHC

SARS-CoV-2 Omicron spike in complex with 5817 Fab

Entity

Entity ID	Chain ID	Description	Type	Chain length	Formula weight	Number of molecules	DB Name (Accession)	Biological source	Descriptive keywords
1	A, B, C	Spike glycoprotein	polymer	1120	124547.5	3	UniProt (P0DTC2) Pfam (PF16451) Pfam (PF09408) Pfam (PF19209) Pfam (PF01601) In PDB	Severe acute respiratory syndrome coronavirus 2	S glycoprotein,E2,Peplomer protein
2	F, H	Heavy chain of 5817 Fab	polymer	125	13387.0	2		Homo sapiens
3	G, J	Light chain of 5817 Fab	polymer	108	11470.5	2		Homo sapiens
4	D, E	2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose	branched		424.4	2	In PDB GlyTouCan (G42666HT)
5	B, C, A	2-acetamido-2-deoxy-beta-D-glucopyranose	non-polymer		221.2	36	Chemie (NAG)
6		water	water		18.0	58	Chemie (HOH)

Sequence modifications

A, B, C: 27 - 1149 (UniProt: P0DTC2)

PDB	External Database	Details
Val 67	Ala 67	conflict
Ile 95	Thr 95	conflict
Asp 142	Gly 142	conflict
Asp 156	Glu 156	conflict
Asp 339	Gly 339	conflict
Leu 371	Ser 371	conflict
Pro 373	Ser 373	conflict
Phe 375	Ser 375	conflict
Asn 417	Lys 417	conflict
Lys 440	Asn 440	conflict
Ser 446	Gly 446	conflict
Asn 477	Ser 477	conflict
Lys 478	Thr 478	conflict
Ala 484	Glu 484	conflict
Arg 493	Gln 493	conflict
Ser 496	Gly 496	conflict
Arg 498	Gln 498	conflict
Tyr 501	Asn 501	conflict
His 505	Tyr 505	conflict
Lys 550	Thr 547	conflict
Gly 617	Asp 614	conflict
Tyr 658	His 655	conflict
Lys 767	Asn 764	conflict
Tyr 799	Asp 796	conflict
Lys 859	Asn 856	conflict
His 957	Gln 954	conflict
Lys 972	Asn 969	conflict
Phe 984	Leu 981	conflict
Pro 989	Lys 986	conflict
Pro 990	Val 987	conflict

Contents of the asymmetric unit

Polymers	Number of chains	7
	Total formula weight	423357.6
Branched	Number of molecules	2
	Total formula weight	848.8
Non-Polymers*	Number of molecules	36
	Total formula weight	7963.5
All*	Total formula weight	432169.9

*Water molecules are not included.