8KHC
SARS-CoV-2 Omicron spike in complex with 5817 Fab
Functional Information from SwissProt/UniProt
site_id | SWS_FT_FI1 |
Number of Residues | 3 |
Details | SITE: Cleavage; by host furin => ECO:0000255|HAMAP-Rule:MF_04099, ECO:0000269|PubMed:32142651, ECO:0000269|PubMed:32362314, ECO:0000269|PubMed:32703818, ECO:0000269|PubMed:34159616 |
Chain | Residue | Details |
A | ARG688 | |
B | ARG688 | |
C | ARG688 |
site_id | SWS_FT_FI2 |
Number of Residues | 3 |
Details | SITE: Cleavage; by host TMPRSS2 or CTSL => ECO:0000255|HAMAP-Rule:MF_04099, ECO:0000269|PubMed:32703818, ECO:0000269|PubMed:34159616 |
Chain | Residue | Details |
A | ARG818 | |
B | ARG818 | |
C | ARG818 |
site_id | SWS_FT_FI3 |
Number of Residues | 15 |
Details | CARBOHYD: N-linked (GlcNAc...) (hybrid) asparagine; by host => ECO:0000255|HAMAP-Rule:MF_04099, ECO:0000269|PubMed:32155444, ECO:0000269|PubMed:32363391, ECO:0000269|PubMed:32366695, ECO:0000269|PubMed:32979942 |
Chain | Residue | Details |
A | ASN61 | |
B | ASN1077 | |
C | ASN61 | |
C | ASN122 | |
C | ASN720 | |
C | ASN804 | |
C | ASN1077 | |
A | ASN122 | |
A | ASN720 | |
A | ASN804 | |
A | ASN1077 | |
B | ASN61 | |
B | ASN122 | |
B | ASN720 | |
B | ASN804 |
site_id | SWS_FT_FI4 |
Number of Residues | 6 |
Details | CARBOHYD: N-linked (GlcNAc...) (complex) asparagine; by host => ECO:0000255|HAMAP-Rule:MF_04099, ECO:0000269|PubMed:32363391, ECO:0000269|PubMed:32366695, ECO:0000269|PubMed:32979942 |
Chain | Residue | Details |
A | ASN74 | |
A | ASN149 | |
B | ASN74 | |
B | ASN149 | |
C | ASN74 | |
C | ASN149 |
site_id | SWS_FT_FI5 |
Number of Residues | 21 |
Details | CARBOHYD: N-linked (GlcNAc...) (complex) asparagine; by host => ECO:0000255|HAMAP-Rule:MF_04099, ECO:0000269|PubMed:32155444, ECO:0000269|PubMed:32363391, ECO:0000269|PubMed:32366695, ECO:0000269|PubMed:32979942 |
Chain | Residue | Details |
A | ASN165 | |
B | ASN333 | |
B | ASN343 | |
B | ASN619 | |
B | ASN660 | |
B | ASN1101 | |
C | ASN165 | |
C | ASN285 | |
C | ASN334 | |
C | ASN346 | |
C | ASN619 | |
A | ASN285 | |
C | ASN660 | |
C | ASN1101 | |
A | ASN333 | |
A | ASN343 | |
A | ASN619 | |
A | ASN660 | |
A | ASN1101 | |
B | ASN165 | |
B | ASN285 |
site_id | SWS_FT_FI6 |
Number of Residues | 6 |
Details | CARBOHYD: N-linked (GlcNAc...) (high mannose) asparagine; by host => ECO:0000255|HAMAP-Rule:MF_04099, ECO:0000269|PubMed:32155444, ECO:0000269|PubMed:32363391, ECO:0000269|PubMed:32366695, ECO:0000269|PubMed:32979942 |
Chain | Residue | Details |
A | ASN237 | |
A | ASN712 | |
B | ASN237 | |
B | ASN712 | |
C | ASN237 | |
C | ASN712 |
site_id | SWS_FT_FI7 |
Number of Residues | 3 |
Details | CARBOHYD: O-linked (GalNAc) threonine; by host => ECO:0000269|PubMed:32363391 |
Chain | Residue | Details |
A | THR326 | |
B | THR326 | |
C | THR326 |
site_id | SWS_FT_FI8 |
Number of Residues | 3 |
Details | CARBOHYD: O-linked (HexNAc...) serine; by host => ECO:0000269|PubMed:32363391 |
Chain | Residue | Details |
A | SER328 | |
B | SER328 | |
C | SER328 |
site_id | SWS_FT_FI9 |
Number of Residues | 3 |
Details | CARBOHYD: N-linked (GlcNAc...) (hybrid) asparagine; by host => ECO:0000255|HAMAP-Rule:MF_04099, ECO:0000269|PubMed:32155444, ECO:0000269|PubMed:32366695, ECO:0000269|PubMed:32979942 |
Chain | Residue | Details |
A | ASN606 | |
B | ASN606 | |
C | ASN606 |
site_id | SWS_FT_FI10 |
Number of Residues | 6 |
Details | CARBOHYD: O-linked (GlcNAc...) threonine; by host GALNT1 => ECO:0000269|PubMed:34732583 |
Chain | Residue | Details |
A | THR679 | |
A | THR681 | |
B | THR679 | |
B | THR681 | |
C | THR679 | |
C | THR681 |
site_id | SWS_FT_FI11 |
Number of Residues | 3 |
Details | CARBOHYD: N-linked (GlcNAc...) (complex) asparagine; by host => ECO:0000255|HAMAP-Rule:MF_04099, ECO:0000269|PubMed:32155444, ECO:0000269|PubMed:32366695, ECO:0000269|PubMed:32979942 |
Chain | Residue | Details |
A | ASN1137 | |
B | ASN1137 | |
C | ASN1137 |