8KCM
MmCPDII-DNA complex containing low-dosage, light induced repaired DNA.
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A, B (A, B) | Deoxyribodipyrimidine photo-lyase | polymer | 482 | 55123.5 | 2 | UniProt (A0A0F8I5V2) UniProt (by SIFTS) (Q8PYK9) | Methanosarcina mazei | DNA photolyase |
| 2 | C, E (C, E) | Repaired DNA | polymer | 14 | 4256.8 | 2 | synthetic construct | ||
| 3 | D, F (D, F) | complementary oligonucleotide to the repaired DNA | polymer | 14 | 4305.8 | 2 | synthetic construct | ||
| 4 | G, N (A, B) | FLAVIN-ADENINE DINUCLEOTIDE | non-polymer | 785.5 | 2 | Chemie (FAD) | |||
| 5 | H (A) | SULFATE ION | non-polymer | 96.1 | 1 | Chemie (SO4) | |||
| 6 | I, J, K, L, M... (A, B) | GLYCEROL | non-polymer | 92.1 | 9 | Chemie (GOL) | |||
| 7 | S, T, U, V, W... (A, B, C, D, E...) | water | water | 18.0 | 556 | Chemie (HOH) |
Sequence modifications
A, B: 3 - 464 (UniProt: A0A0F8I5V2)
| PDB | External Database | Details |
|---|---|---|
| Met -17 | - | initiating methionine |
| Gly -16 | - | expression tag |
| Ser -15 | - | expression tag |
| Ser -14 | - | expression tag |
| His -13 | - | expression tag |
| His -12 | - | expression tag |
| His -11 | - | expression tag |
| His -10 | - | expression tag |
| His -9 | - | expression tag |
| His -8 | - | expression tag |
| Ser -7 | - | expression tag |
| Ser -6 | - | expression tag |
| Gly -5 | - | expression tag |
| Leu -4 | - | expression tag |
| Val -3 | - | expression tag |
| Pro -2 | - | expression tag |
| Arg -1 | - | expression tag |
| Gly 0 | - | expression tag |
| Ser 1 | - | expression tag |
| His 2 | - | expression tag |
| Thr 377 | Met 375 | engineered mutation |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 6 |
| Total formula weight | 127372.1 | |
| Non-Polymers* | Number of molecules | 12 |
| Total formula weight | 2496.0 | |
| All* | Total formula weight | 129868.1 |
