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8KCM

MmCPDII-DNA complex containing low-dosage, light induced repaired DNA.

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsSPRING-8 BEAMLINE BL32XU
Synchrotron siteSPring-8
BeamlineBL32XU
Temperature [K]100
Detector technologyCCD
Collection date2018-07-30
DetectorRAYONIX MX225HE
Wavelength(s)1.0
Spacegroup nameP 21 21 21
Unit cell lengths71.830, 115.040, 167.710
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution49.290 - 2.500
R-factor0.2198
Rwork0.218
R-free0.25870
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)7yc7
RMSD bond length0.005
RMSD bond angle0.727
Data reduction softwareXDS
Data scaling softwareXSCALE
Phasing softwareREFMAC
Refinement softwarePHENIX ((1.20.1_4487: ???))
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]49.9502.650
High resolution limit [Å]2.5002.500
Number of reflections489317737
<I/σ(I)>4.66
Completeness [%]99.9100
Redundancy26.53
CC(1/2)0.7390.437
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1BATCH MODE4.6296100 mM Sodium Acetate pH 4.6 250 mM ammonium sulfate 4% PEG4000 (w/v) 50 mM DTT

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PDB entries from 2024-10-30

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