8KCM
MmCPDII-DNA complex containing low-dosage, light induced repaired DNA.
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SPRING-8 BEAMLINE BL32XU |
Synchrotron site | SPring-8 |
Beamline | BL32XU |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2018-07-30 |
Detector | RAYONIX MX225HE |
Wavelength(s) | 1.0 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 71.830, 115.040, 167.710 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 49.290 - 2.500 |
R-factor | 0.2198 |
Rwork | 0.218 |
R-free | 0.25870 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 7yc7 |
RMSD bond length | 0.005 |
RMSD bond angle | 0.727 |
Data reduction software | XDS |
Data scaling software | XSCALE |
Phasing software | REFMAC |
Refinement software | PHENIX ((1.20.1_4487: ???)) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 49.950 | 2.650 |
High resolution limit [Å] | 2.500 | 2.500 |
Number of reflections | 48931 | 7737 |
<I/σ(I)> | 4.66 | |
Completeness [%] | 99.9 | 100 |
Redundancy | 26.53 | |
CC(1/2) | 0.739 | 0.437 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | BATCH MODE | 4.6 | 296 | 100 mM Sodium Acetate pH 4.6 250 mM ammonium sulfate 4% PEG4000 (w/v) 50 mM DTT |