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8JP6

Cryo-EM structures of the head region of full-length ERGIC-53 with MCFD2 (Substate A)

Entity
Entity IDChain IDDescriptionTypeChain lengthFormula weightNumber of moleculesDB Name (Accession)Biological sourceDescriptive keywords
1A, B, E, F
(A, B, E, F)
Protein ERGIC-53polymer52258766.04UniProt (P49257)
Pfam (PF03388)
Homo sapiens (human)ER-Golgi intermediate compartment 53 kDa protein,Gp58,Intracellular mannose-specific lectin MR60,Lectin mannose-binding 1
2C, D, G, H
(C, D, G, H)
Multiple coagulation factor deficiency protein 2polymer12413952.24UniProt (Q8NI22)
Pfam (PF13499)
Homo sapiens (human)Neural stem cell-derived neuronal survival protein
3AA, I, J, K, L...
(H, A, B, C, D...)
CALCIUM IONnon-polymer40.116Chemie (CA)
4BA, O, R, Y
(H, C, D, G)
ZINC IONnon-polymer65.44Chemie (ZN)
Sequence modifications
A, B, E, F: 1 - 510 (UniProt: P49257)
PDBExternal DatabaseDetails
Gly 511-expression tag
Val 512-expression tag
Ala 513-expression tag
Met 514-expression tag
Pro 515-expression tag
Gly 516-expression tag
Ala 517-expression tag
Glu 518-expression tag
Asp 519-expression tag
Asp 520-expression tag
Val 521-expression tag
Val 522-expression tag
C, D, G, H: 27 - 146 (UniProt: Q8NI22)
PDBExternal DatabaseDetails
Gly 23-expression tag
Ser 24-expression tag
His 25-expression tag
Met 26-expression tag
Sequence viewer
Contents of the asymmetric unit
PolymersNumber of chains8
Total formula weight290873.0
Non-Polymers*Number of molecules20
Total formula weight902.9
All*Total formula weight291775.9
*Water molecules are not included.

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PDB entries from 2025-06-11

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