8JNK
Crystal structure of human ALKBH3 bound to ssDNA through active site crosslink
Entity
Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
1 | A, C, E, G | Alpha-ketoglutarate-dependent dioxygenase alkB homolog 3 | polymer | 232 | 27013.3 | 4 | UniProt (Q96Q83) Pfam (PF13532) In PDB | Homo sapiens (human) | Alkylated DNA repair protein alkB homolog 3,hABH3 |
2 | B, D, F, H | DNA | polymer | 6 | 1844.3 | 4 | Homo sapiens | ||
3 | I, J, K, L | Synthetic antibody heavy chain | polymer | 216 | 22927.5 | 4 | Homo sapiens (human) | ||
4 | M, N, O, P | Synthetic antibody light chain | polymer | 217 | 23667.3 | 4 | Homo sapiens (human) | ||
5 | A, C, E, G | N-OXALYLGLYCINE | non-polymer | 147.1 | 4 | Chemie (OGA) | |||
6 | A, C, E, G | MANGANESE (II) ION | non-polymer | 54.9 | 4 | Chemie (MN) | |||
7 | water | water | 18.0 | 277 | Chemie (HOH) |
Sequence modifications
A, C, E, G: 70 - 280 (UniProt: Q96Q83)
PDB | External Database | Details |
---|---|---|
Met 49 | - | initiating methionine |
Gly 50 | - | expression tag |
Ser 51 | - | expression tag |
Ser 52 | - | expression tag |
His 53 | - | expression tag |
His 54 | - | expression tag |
His 55 | - | expression tag |
His 56 | - | expression tag |
His 57 | - | expression tag |
His 58 | - | expression tag |
Ser 59 | - | expression tag |
Ser 60 | - | expression tag |
Gly 61 | - | expression tag |
Leu 62 | - | expression tag |
Val 63 | - | expression tag |
Pro 64 | - | expression tag |
Arg 65 | - | expression tag |
Gly 66 | - | expression tag |
Ser 67 | - | expression tag |
His 68 | - | expression tag |
Met 69 | - | expression tag |
Ser 110 | Cys 110 | engineered mutation |
Cys 195 | Glu 195 | conflict |
Ser 201 | Cys 201 | engineered mutation |
Sequence viewer
Contents of the asymmetric unit
Polymers | Number of chains | 16 |
Total formula weight | 301809.8 | |
Non-Polymers* | Number of molecules | 8 |
Total formula weight | 808.1 | |
All* | Total formula weight | 302617.9 |