8JIV
Atomic structure of wheat ribosome reveals unique features of the plant ribosomes
This is a non-PDB format compatible entry.
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A (Aa) | 25S rRNA | polymer | 3391 | 1098269.6 | 1 | GenBank (2123606587) | Triticum aestivum (bread wheat) | |
| 2 | B (Ab) | 5S rRNA | polymer | 119 | 38411.8 | 1 | GenBank (X06094.1) | Triticum aestivum (bread wheat) | |
| 3 | C (Ac) | 5.8S rRNA | polymer | 158 | 50953.3 | 1 | GenBank (AF438188.1) | Triticum aestivum (bread wheat) | |
| 4 | D (CA) | Ribosomal protein L2 C-terminal domain-containing protein | polymer | 261 | 28251.5 | 1 | UniProt (W5ECL2) Pfam (PF00181) Pfam (PF03947) | Triticum aestivum (bread wheat) | |
| 5 | E (CB) | Ribosomal protein L3 | polymer | 385 | 44262.8 | 1 | UniProt (Q7X744) Pfam (PF00297) | Triticum aestivum (bread wheat) | Ribosomal protein L3-A1,Ribosomal protein L3A-1 |
| 6 | F (CC) | 60S ribosomal protein L4 C-terminal domain-containing protein | polymer | 405 | 44822.0 | 1 | Triticum aestivum (bread wheat) | ||
| 7 | G (CD) | Ribosomal protein L5 eukaryotic C-terminal domain-containing protein | polymer | 307 | 35341.1 | 1 | UniProt (A0A3B6DD91) Pfam (PF17144) Pfam (PF14204) | Triticum aestivum (bread wheat) | |
| 8 | H (CE) | 60S ribosomal protein L6 | polymer | 232 | 25924.1 | 1 | UniProt (A0A3B6QGW3) Pfam (PF01159) | Triticum aestivum (bread wheat) | |
| 9 | I (CF) | 60S ribosomal protein uL30 | polymer | 244 | 28161.1 | 1 | UniProt (A0A3B6DM38) Pfam (PF08079) Pfam (PF00327) | Triticum aestivum (bread wheat) | |
| 10 | J (CG) | 60S ribosomal protein L7a | polymer | 258 | 29407.2 | 1 | UniProt (A0A3B6RED0) Pfam (PF01248) | Triticum aestivum (bread wheat) | |
| 11 | K (CH) | Ribosomal protein L6 alpha-beta domain-containing protein | polymer | 189 | 21301.9 | 1 | UniProt (A0A077RTE5) Pfam (PF00347) | Triticum aestivum (bread wheat) | |
| 12 | L (CI) | Ribosomal protein L10e/L16 domain-containing protein | polymer | 217 | 24516.9 | 1 | UniProt (A0A3B6HUM3) Pfam (PF00252) | Triticum aestivum (bread wheat) | |
| 13 | M (CJ) | 60S ribosomal protein L11 | polymer | 180 | 20725.1 | 1 | UniProt (A0A3B5XX39) Pfam (PF00281) Pfam (PF00673) | Triticum aestivum (bread wheat) | |
| 14 | N (CL) | 60S ribosomal protein L13 | polymer | 208 | 24170.3 | 1 | UniProt (A0A3B6QBU0) Pfam (PF01294) | Triticum aestivum (bread wheat) | |
| 15 | O (CM) | Ribosomal protein L14e domain-containing protein | polymer | 135 | 15490.5 | 1 | UniProt (A0A3B6DGT8) Pfam (PF01929) | Triticum aestivum (bread wheat) | |
| 16 | P (CN) | Ribosomal protein L15 | polymer | 204 | 24488.7 | 1 | UniProt (W5FEX7) Pfam (PF00827) | Triticum aestivum (bread wheat) | |
| 17 | Q (CO) | Ribosomal protein L13a | polymer | 206 | 23581.2 | 1 | UniProt (Q5I7L1) Pfam (PF00572) | Triticum aestivum (bread wheat) | |
| 18 | R (CP) | 60S ribosomal protein uL22 | polymer | 170 | 19525.5 | 1 | UniProt (W5FSM8) Pfam (PF00237) | Triticum aestivum (bread wheat) | |
| 19 | S (CQ) | Ribosomal protein L18e/L15P domain-containing protein | polymer | 188 | 21351.3 | 1 | UniProt (A0A3B5ZQE8) Pfam (PF17135) | Triticum aestivum (bread wheat) | |
| 20 | T (CR) | Ribosomal protein L19 | polymer | 206 | 24059.7 | 1 | UniProt (A0A3B6C2W3) Pfam (PF01280) | Triticum aestivum (bread wheat) | |
| 21 | U (CS) | 60S ribosomal protein L18a | polymer | 178 | 21296.0 | 1 | UniProt (A0A3B5Z5M6) Pfam (PF01775) | Triticum aestivum (bread wheat) | |
| 22 | V (CT) | 60S ribosomal protein L21 | polymer | 164 | 18719.8 | 1 | UniProt (F4YWL9) Pfam (PF01157) | Triticum aestivum (bread wheat) | |
| 23 | W (CU) | Genome assembly, chromosome: II | polymer | 129 | 14372.5 | 1 | UniProt (W5C5N9) Pfam (PF01776) | Triticum aestivum (bread wheat) | |
| 24 | X (CV) | Ribosomal protein L17 | polymer | 136 | 14536.2 | 1 | UniProt (Q5I7K4) Pfam (PF00238) | Triticum aestivum (bread wheat) | |
| 25 | Y (CW) | TRASH domain-containing protein | polymer | 161 | 18293.6 | 1 | UniProt (A0A3B6ELC9) Pfam (PF01246) | Triticum aestivum (bread wheat) | |
| 26 | Z (CX) | Genome assembly, chromosome: II | polymer | 152 | 16920.2 | 1 | UniProt (A0A1D5UQZ5) Pfam (PF03939) Pfam (PF00276) | Triticum aestivum (bread wheat) | |
| 27 | AA (CY) | KOW domain-containing protein | polymer | 127 | 14735.4 | 1 | UniProt (A0A3B6GQI2) Pfam (PF16906) Pfam (PF00467) UniProt (by SIFTS) (W5D739) | Triticum aestivum (bread wheat) | |
| 28 | BA (CZ) | 60S ribosomal protein L27 | polymer | 137 | 15615.7 | 1 | UniProt (A0A341XZK6) Pfam (PF00467) Pfam (PF01777) | Triticum aestivum (bread wheat) | |
| 29 | CA (Ca) | Ribosomal protein L18e/L15P domain-containing protein | polymer | 145 | 16069.0 | 1 | UniProt (A0A3B6AUW8) Pfam (PF00828) | Triticum aestivum (bread wheat) | |
| 30 | DA (Cb) | 60S ribosomal protein L29 | polymer | 60 | 6994.1 | 1 | UniProt (A0A1D5RRD3) Pfam (PF01779) | Triticum aestivum (bread wheat) | |
| 31 | EA (Cc) | Ribosomal protein L7Ae/L30e/S12e/Gadd45 domain-containing protein | polymer | 112 | 12372.5 | 1 | UniProt (W4ZRU3) Pfam (PF01248) UniProt (by SIFTS) (Q5I7K9) | Triticum aestivum (bread wheat) | |
| 32 | FA (Cd) | 60S ribosomal protein L31 | polymer | 123 | 14152.4 | 1 | UniProt (W5G990) Pfam (PF01198) | Triticum aestivum (bread wheat) | |
| 33 | GA (Ce) | 60S ribosomal protein eL32 | polymer | 133 | 15737.6 | 1 | UniProt (A0A3B6SDD9) Pfam (PF01655) | Triticum aestivum (bread wheat) | |
| 34 | HA (Cf) | 60S ribosomal protein eL33 | polymer | 111 | 12684.7 | 1 | Triticum aestivum (bread wheat) | ||
| 35 | IA (Cg) | 60S ribosomal protein L34 | polymer | 119 | 13798.4 | 1 | UniProt (A0A3B6RFY8) Pfam (PF01199) | Triticum aestivum (bread wheat) | |
| 36 | JA (Ch) | 60S ribosomal protein L35 | polymer | 124 | 14401.0 | 1 | UniProt (Q8L805) Pfam (PF00831) | Triticum aestivum (bread wheat) | |
| 37 | KA (Ci) | 60S ribosomal protein L36 | polymer | 111 | 12594.1 | 1 | UniProt (A0A1D5S805) Pfam (PF01158) | Triticum aestivum (bread wheat) | |
| 38 | LA (Cj) | Ribosomal protein L37 | polymer | 93 | 10765.6 | 1 | UniProt (A0A1D6BC85) Pfam (PF01907) | Triticum aestivum (bread wheat) | |
| 39 | MA (Ck) | 60S ribosomal protein L38 | polymer | 69 | 8115.6 | 1 | UniProt (A0A1D5W6Q2) Pfam (PF01781) | Triticum aestivum (bread wheat) | |
| 40 | NA (Cl) | Ribosomal protein L39 | polymer | 51 | 6528.8 | 1 | UniProt (Q5I7K7) Pfam (PF00832) | Triticum aestivum (bread wheat) | |
| 41 | OA (Cm) | Ubiquitin-like domain-containing protein | polymer | 129 | 14828.4 | 1 | UniProt (A0A1D5XNC2) Pfam (PF00240) Pfam (PF01020) | Triticum aestivum (bread wheat) | |
| 42 | PA (Co) | Genome assembly, chromosome: II | polymer | 105 | 12152.5 | 1 | UniProt (W5HX73) Pfam (PF00935) UniProt (by SIFTS) (A0A3B6C6X2) | Triticum aestivum (bread wheat) | |
| 43 | QA (Cp) | 60S ribosomal protein L37a, expressed | polymer | 92 | 10266.1 | 1 | UniProt (D8L9P6) Pfam (PF01780) | Triticum aestivum (bread wheat) | |
| 44 | RA (Cr) | Ribosomal L28e/Mak16 domain-containing protein | polymer | 147 | 16607.4 | 1 | UniProt (A0A3B5ZZN9) Pfam (PF01778) UniProt (by SIFTS) (A0A3B5Y651) | Triticum aestivum (bread wheat) | |
| 45 | AB, AC, AD, BB, BC... (Aa, Ac, CA, CI, CL...) | POTASSIUM ION | non-polymer | 39.1 | 72 | Chemie (K) | |||
| 46 | AE, AF, AG, AH, AI... (Aa, Ab, Ac, CB, CI...) | MAGNESIUM ION | non-polymer | 24.3 | 242 | Chemie (MG) | |||
| 47 | TM, UM, WM (Cj, Cm, Co) | ZINC ION | non-polymer | 65.4 | 3 | Chemie (ZN) |
Sequence modifications
Aa: 2 - 3391 (GenBank: 2123606587)
Ac: 1 - 159 (GenBank: AF438188.1)
| PDB | External Database | Details |
|---|---|---|
| G 1 | - | conflict |
| PDB | External Database | Details |
|---|---|---|
| - | C 304 | deletion |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 44 |
| Total formula weight | 1975573.2 | |
| Non-Polymers* | Number of molecules | 317 |
| Total formula weight | 8893.1 | |
| All* | Total formula weight | 1984466.3 |
