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8IPY

human nuclear pre-60S ribosomal particle - State D'

This is a non-PDB format compatible entry.
Entity
Entity IDChain IDDescriptionTypeChain lengthFormula weightNumber of moleculesDB Name (Accession)Biological sourceDescriptive keywords
1NProtein SDA1 homologpolymer68780005.51UniProt (Q9NVU7)
Pfam (PF08158)
Pfam (PF05285)
Pfam (PF21638)
In PDB
Homo sapiens (human)Nucleolar protein 130,SDA1 domain-containing protein 1,hSDA
2228S rRNApolymer50541636438.51Homo sapiens (human)
36Eukaryotic translation initiation factor 6polymer24526620.01UniProt (P56537)
Pfam (PF01912)
In PDB
Homo sapiens (human)eIF-6,B(2)GCN homolog,B4 integrin interactor,CAB,p27(BBP)
47Probable ribosome biogenesis protein RLP24polymer16319666.31UniProt (Q9UHA3)
Pfam (PF01246)
In PDB
Homo sapiens (human)Ribosomal L24 domain-containing protein 1,Ribosomal protein L24-like
585.8S rRNApolymer15650157.71GenBank (KY962518)Homo sapiens (human)
69Zinc finger protein 593polymer13415230.21UniProt (O00488)
Pfam (PF12171)
In PDB
Homo sapiens (human)Zinc finger protein T86
7A60S ribosomal protein L29polymer15917804.31UniProt (P47914)
Pfam (PF01779)
In PDB
Homo sapiens (human)Large ribosomal subunit protein eL29
8B60S ribosomal protein L3polymer40346211.11UniProt (P39023)
Pfam (PF00297)
In PDB
Homo sapiens (human)Large ribosomal subunit protein uL3
9D60S ribosomal protein L4polymer42747804.61UniProt (P36578)
Pfam (PF00573)
Pfam (PF14374)
In PDB
Homo sapiens (human)Large ribosomal subunit protein uL4
10E60S ribosomal protein L30polymer11512805.11UniProt (P62888)
Pfam (PF01248)
In PDB
Homo sapiens (human)Large ribosomal subunit protein eL30
11G60S ribosomal protein L7apolymer26630061.81UniProt (P62424)
Pfam (PF01248)
In PDB
Homo sapiens (human)Large ribosomal subunit protein eL8
12H60S ribosomal protein L35polymer12314593.61UniProt (P42766)
Pfam (PF00831)
In PDB
Homo sapiens (human)Large ribosomal subunit protein uL29
13I60S ribosomal protein L9polymer19221899.51UniProt (P32969)
Pfam (PF00347)
In PDB
Homo sapiens (human)Large ribosomal subunit protein uL6
14JRibosome biogenesis protein NSA2 homologpolymer26030136.71UniProt (O95478)
Pfam (PF01201)
In PDB
Homo sapiens (human)Hairy cell leukemia protein 1,TGF-beta-inducible nuclear protein 1
15L60S ribosomal protein L27apolymer14816604.51UniProt (P46776)
Pfam (PF00828)
In PDB
Homo sapiens (human)Large ribosomal subunit protein uL15
16M60S ribosomal protein L37polymer9711111.01UniProt (P61927)
Pfam (PF01907)
In PDB
Homo sapiens (human)Large ribosomal subunit protein eL37
17P60S ribosomal protein L39polymer516426.81UniProt (P62891)
Pfam (PF00832)
In PDB
Homo sapiens (human)Large ribosomal subunit protein eL39
18Q60S ribosomal protein L13polymer21124321.71UniProt (P26373)
Pfam (PF01294)
In PDB
Homo sapiens (human)Large ribosomal subunit protein eL13
19S60S ribosomal protein L14polymer21523485.01UniProt (P50914)
Pfam (PF01929)
In PDB
Homo sapiens (human)Large ribosomal subunit protein eL14
20U60S ribosomal protein L15polymer20424207.31UniProt (P61313)
Pfam (PF00827)
In PDB
Homo sapiens (human)Large ribosomal subunit protein eL15
21V60S ribosomal protein L13apolymer20323633.41UniProt (P40429)
Pfam (PF00572)
In PDB
Homo sapiens (human)Large ribosomal subunit protein uL13
22X60S ribosomal protein L37apolymer9210299.41UniProt (P61513)
Pfam (PF01780)
In PDB
Homo sapiens (human)Large ribosomal subunit protein eL43
23Z60S ribosomal protein L18polymer18821687.71UniProt (Q07020)
Pfam (PF17135)
In PDB
Homo sapiens (human)Large ribosomal subunit protein eL18
24a60S ribosomal protein L19polymer19623535.31UniProt (P84098)
Pfam (PF01280)
In PDB
Homo sapiens (human)Large ribosomal subunit protein eL19
25b60S ribosomal protein L18apolymer17620808.51UniProt (Q02543)
Pfam (PF01775)
In PDB
Homo sapiens (human)Large ribosomal subunit protein eL20
26e60S ribosomal protein L23polymer14014892.51UniProt (P62829)
Pfam (PF00238)
In PDB
Homo sapiens (human)Large ribosomal subunit protein uL14
27h60S ribosomal protein L26polymer14517303.41UniProt (P61254)
Pfam (PF16906)
Pfam (PF00467)
In PDB
Homo sapiens (human)Large ribosomal subunit protein uL24
28l60S ribosomal protein L28polymer13715784.61UniProt (P46779)
Pfam (PF01778)
In PDB
Homo sapiens (human)Large ribosomal subunit protein eL28
29m60S ribosomal protein L8polymer25728088.91UniProt (P62917)
Pfam (PF00181)
Pfam (PF03947)
In PDB
Homo sapiens (human)Large ribosomal subunit protein uL2
30n60S ribosomal protein L35apolymer11012564.71UniProt (P18077)
Pfam (PF01247)
In PDB
Homo sapiens (human)Large ribosomal subunit protein eL33
31o60S ribosomal protein L6polymer28832810.21UniProt (Q02878)
Pfam (PF03868)
Pfam (PF01159)
In PDB
Homo sapiens (human)Large ribosomal subunit protein eL6
32p60S ribosomal protein L7polymer24829291.01UniProt (P18124)
Pfam (PF08079)
Pfam (PF00327)
In PDB
Homo sapiens (human)Large ribosomal subunit protein uL30
33rCoiled-coil domain-containing protein 86polymer36040312.71UniProt (Q9H6F5)
Pfam (PF03879)
In PDB
Homo sapiens (human)Cytokine-induced protein with coiled-coil domain
34uGuanine nucleotide-binding protein-like 3polymer54962098.21UniProt (Q9BVP2)
Pfam (PF08701)
Pfam (PF01926)
In PDB
Homo sapiens (human)E2-induced gene 3 protein,Novel nucleolar protein 47,NNP47,Nucleolar GTP-binding protein 3,Nucleostemin
35vmRNA turnover protein 4 homologpolymer23927602.51UniProt (Q9UKD2)
Pfam (PF00466)
Pfam (PF17777)
In PDB
Homo sapiens (human)Ribosome assembly factor MRTO4
36wG Protein Nucleolar 2polymer73183796.11UniProt (Q13823)
Pfam (PF08153)
Pfam (PF01926)
In PDB
Homo sapiens (human)Autoantigen NGP-1
37y60S ribosomal protein L12polymer16517847.61UniProt (P30050)
Pfam (PF03946)
Pfam (PF00298)
In PDB
Homo sapiens (human)Large ribosomal subunit protein uL11
38zProtein LLP homologpolymer12915268.41UniProt (Q9BRT6)
Pfam (PF10169)
In PDB
Homo sapiens (human)Protein LAPS18-like
39C60S ribosomal protein L11polymer17820288.51UniProt (P62913)
Pfam (PF00281)
Pfam (PF00673)
In PDB
Homo sapiens (human)Large ribosomal subunit protein uL5
40R60S ribosomal protein L5polymer29734426.81UniProt (P46777)
Pfam (PF17144)
Pfam (PF14204)
In PDB
Homo sapiens (human)Large ribosomal subunit protein uL18
41WNotchless protein homolog 1polymer48553387.11UniProt (Q9NVX2)
Pfam (PF08154)
Pfam (PF00400)
In PDB
Homo sapiens (human)
42T60S ribosomal protein L21polymer16018610.01UniProt (P46778)
Pfam (PF01157)
In PDB
Homo sapiens (human)Large ribosomal subunit protein eL21
434GTP-binding protein 4polymer63474107.81UniProt (Q9BZE4)
Pfam (PF17835)
Pfam (PF06858)
Pfam (PF08155)
In PDB
Homo sapiens (human)Chronic renal failure gene protein,GTP-binding protein NGB
44Y60S ribosomal protein L17polymer18421443.21UniProt (P18621)
Pfam (PF00237)
In PDB
Homo sapiens (human)Large ribosomal subunit protein uL22
45k60S ribosomal protein L32polymer13515898.91UniProt (P62910)
Pfam (PF01655)
In PDB
Homo sapiens (human)Large ribosomal subunit protein eL32
46j60S ribosomal protein L31polymer12514494.91UniProt (P62899)
Pfam (PF01198)
In PDB
Homo sapiens (human)Large ribosomal subunit protein eL31
47d60S ribosomal protein L22polymer12814813.01UniProt (P35268)
Pfam (PF01776)
In PDB
Homo sapiens (human)Large ribosomal subunit protein eL22
48tMKI67 FHA domain-interacting nucleolar phosphoproteinpolymer29334285.31UniProt (Q9BYG3)
Pfam (PF00076)
Pfam (PF12196)
In PDB
Homo sapiens (human)Nucleolar phosphoprotein Nopp34,Nucleolar protein interacting with the FHA domain of pKI-67,hNIFK
49xITS2polymer16031330.21Homo sapiens
50cRibosomal L1 domain-containing protein 1polymer49055089.81UniProt (O76021)
Pfam (PF00687)
In PDB
Homo sapiens (human)CATX-11,Cellular senescence-inhibited gene protein,Protein PBK1
51160S ribosomal protein L7-like 1polymer25529730.41UniProt (Q6DKI1)
Pfam (PF08079)
Pfam (PF00327)
In PDB
Homo sapiens (human)Large ribosomal subunit protein uL30-like 1
52K60S ribosomal protein L36polymer10512290.91UniProt (Q9Y3U8)
Pfam (PF01158)
In PDB
Homo sapiens (human)Large ribosomal subunit protein eL36
53F60S ribosomal protein L34polymer11713326.11UniProt (P49207)
Pfam (PF01199)
In PDB
Homo sapiens (human)Large ribosomal subunit protein eL34
54i60S ribosomal protein L27polymer13615835.81UniProt (P61353)
Pfam (PF00467)
Pfam (PF01777)
In PDB
Homo sapiens (human)Large ribosomal subunit protein eL27
55O60S ribosomal protein L38polymer708238.91UniProt (P63173)
Pfam (PF01781)
In PDB
Homo sapiens (human)Large ribosomal subunit protein eL38
5635S rRNApolymer12038651.91Homo sapiens
57qPescadillo homologpolymer58868114.71UniProt (O00541)
Pfam (PF06732)
Pfam (PF16589)
In PDB
Homo sapiens (human)
58g60S ribosomal protein L23apolymer15617740.21UniProt (P62750)
Pfam (PF03939)
Pfam (PF00276)
In PDB
Homo sapiens (human)Large ribosomal subunit protein uL23
59fRibosome biogenesis protein NOP53polymer47854498.41UniProt (Q9NZM5)
Pfam (PF07767)
In PDB
Homo sapiens (human)Glioma tumor suppressor candidate region gene 2 protein,Protein interacting with carboxyl terminus 1,PICT-1,p60
60wGUANOSINE-5'-TRIPHOSPHATEnon-polymer523.21Chemie (GTP)
61wMAGNESIUM IONnon-polymer24.31Chemie (MG)
Sequence viewer
Contents of the asymmetric unit
PolymersNumber of chains59
Total formula weight3299819.0
Non-Polymers*Number of molecules2
Total formula weight547.5
All*Total formula weight3300366.5
*Water molecules are not included.

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PDB entries from 2024-07-24

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