8IDI
Crystal structure of nanobody VHH-T71 with MERS-CoV RBD
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A, C (A, C) | VHH-T71 | polymer | 137 | 14950.3 | 2 | Camelus dromedarius | ||
| 2 | B, D (B, D) | Spike protein S1 | polymer | 229 | 25258.4 | 2 | UniProt (R9UQ53) Pfam (PF09408) UniProt (by SIFTS) (K9N5Q8) | Middle East respiratory syndrome-related coronavirus (MERS-CoV) | S glycoprotein,E2,Peplomer protein |
| 3 | E, F (E, F) | beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-D-mannopyranose-(1-3)][alpha-D-mannopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 910.8 | 2 | In PDB | |||
| 4 | G, H, I, J (A, B, C, D) | water | water | 18.0 | 818 | Chemie (HOH) |
Sequence modifications
B, D: 367 - 588 (UniProt: R9UQ53)
| PDB | External Database | Details |
|---|---|---|
| Glu 589 | - | expression tag |
| His 590 | - | expression tag |
| His 591 | - | expression tag |
| His 592 | - | expression tag |
| His 593 | - | expression tag |
| His 594 | - | expression tag |
| His 595 | - | expression tag |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 4 |
| Total formula weight | 80417.4 | |
| Branched | Number of molecules | 2 |
| Total formula weight | 1821.6 | |
| All* | Total formula weight | 82239.0 |
