8I9R
Cryo-EM structure of a Chaetomium thermophilum pre-60S ribosomal subunit - State 5S RNP
This is a non-PDB format compatible entry.
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A (C1) | RNA (3341-MER) | polymer | 3341 | 1080019.1 | 1 | Chaetomium thermophilum | ||
| 2 | B (C2) | RNA (256-MER) | polymer | 256 | 82467.7 | 1 | Chaetomium thermophilum | ||
| 3 | C (CA) | Brix domain-containing protein | polymer | 316 | 36482.0 | 1 | UniProt (G0RXZ3) Pfam (PF04427) | Chaetomium thermophilum | |
| 4 | D (CB) | Ribosome biogenesis protein C8F11.04 | polymer | 391 | 43700.5 | 1 | UniProt (G0S7X0) Pfam (PF00687) | Chaetomium thermophilum | |
| 5 | E (CC) | Ribosome biogenesis protein ERB1 | polymer | 801 | 90838.0 | 1 | UniProt (G0SCK6) Pfam (PF08145) Pfam (PF00400) | Chaetomium thermophilum | Eukaryotic ribosome biogenesis protein 1 |
| 6 | F (CE) | RNA helicase | polymer | 598 | 66830.9 | 1 | UniProt (G0RYU9) Pfam (PF00270) Pfam (PF00271) Pfam (PF13959) | Chaetomium thermophilum | |
| 7 | G (CH) | Nucleolar GTP-binding protein 1 | polymer | 661 | 75621.5 | 1 | UniProt (G0S8F1) Pfam (PF17835) Pfam (PF06858) Pfam (PF08155) | Chaetomium thermophilum | |
| 8 | H (CI) | Putative RNA-binding protein | polymer | 414 | 45884.4 | 1 | UniProt (G0S1H0) Pfam (PF00076) | Chaetomium thermophilum | |
| 9 | I (CJ) | Pescadillo homolog | polymer | 679 | 77167.3 | 1 | UniProt (G0SHX6) Pfam (PF06732) Pfam (PF00533) | Chaetomium thermophilum | Nucleolar protein 7 homolog |
| 10 | J, S (CM, LF) | 60S ribosomal protein l7-like protein | polymer | 249 | 28821.8 | 2 | UniProt (G0SFL0) Pfam (PF08079) Pfam (PF00327) | Chaetomium thermophilum | |
| 11 | K (CN) | Eukaryotic translation initiation factor 6 | polymer | 246 | 26468.8 | 1 | UniProt (G0S683) Pfam (PF01912) | Chaetomium thermophilum | |
| 12 | L (CQ) | Ribosome biogenesis protein RLP24 | polymer | 225 | 26434.3 | 1 | UniProt (G0S497) Pfam (PF01246) | Chaetomium thermophilum | |
| 13 | M (CR) | Nucleolar protein 16 | polymer | 237 | 26960.5 | 1 | UniProt (G0S832) Pfam (PF09420) | Chaetomium thermophilum | |
| 14 | N (CU) | rRNA-processing protein EBP2 | polymer | 451 | 50255.6 | 1 | UniProt (G0SGC2) Pfam (PF05890) | Chaetomium thermophilum | |
| 15 | O (Ch) | Ribosomal RNA-processing protein 15 | polymer | 354 | 38314.2 | 1 | UniProt (G0S5P7) Pfam (PF07890) | Chaetomium thermophilum | |
| 16 | P (LB) | 60S ribosomal protein L3-like protein | polymer | 392 | 44456.9 | 1 | UniProt (G0RXW1) Pfam (PF00297) | Chaetomium thermophilum | |
| 17 | Q (LC) | 60S ribosomal protein L4-like protein | polymer | 365 | 39439.9 | 1 | UniProt (G0SFC3) Pfam (PF00573) Pfam (PF14374) | Chaetomium thermophilum | |
| 18 | R (LE) | 60S ribosomal protein L6 | polymer | 200 | 22133.0 | 1 | UniProt (G0S0D6) Pfam (PF01159) | Chaetomium thermophilum | |
| 19 | T (LG) | 60S ribosomal protein L8 | polymer | 262 | 29744.5 | 1 | UniProt (G0SAJ9) Pfam (PF01248) | Chaetomium thermophilum | |
| 20 | U (LL) | 60S ribosomal protein L13 | polymer | 213 | 24191.2 | 1 | UniProt (G0S992) Pfam (PF01294) | Chaetomium thermophilum | |
| 21 | V (LM) | 60S ribosomal protein L14-like protein | polymer | 142 | 16111.9 | 1 | UniProt (G0S1R0) Pfam (PF01929) | Chaetomium thermophilum | |
| 22 | W (LN) | Ribosomal protein L15 | polymer | 203 | 24307.3 | 1 | UniProt (G0RZ88) Pfam (PF00827) | Chaetomium thermophilum | |
| 23 | X (LO) | 60S ribosomal protein L16-like protein | polymer | 204 | 22993.2 | 1 | UniProt (G0SH61) Pfam (PF00572) | Chaetomium thermophilum | |
| 24 | Y (LP) | 60S ribosomal protein l17-like protein | polymer | 187 | 21072.2 | 1 | UniProt (G0SGY1) Pfam (PF00237) | Chaetomium thermophilum | |
| 25 | Z (LQ) | Ribosomal protein L18-like protein | polymer | 213 | 24195.5 | 1 | UniProt (G0S9B5) Pfam (PF17135) | Chaetomium thermophilum | |
| 26 | AA (LS) | 60S ribosomal protein L20 | polymer | 174 | 20341.9 | 1 | UniProt (G0SCE2) Pfam (PF01775) | Chaetomium thermophilum | |
| 27 | BA (LT) | 60S ribosomal protein l21-like protein | polymer | 160 | 18159.2 | 1 | UniProt (G0S0Z3) Pfam (PF01157) | Chaetomium thermophilum | |
| 28 | CA (LV) | 60S ribosomal protein l23-like protein | polymer | 139 | 14674.4 | 1 | UniProt (G0SI44) Pfam (PF00238) | Chaetomium thermophilum | |
| 29 | DA (LY) | 60S ribosomal protein L26-like protein | polymer | 138 | 15565.3 | 1 | UniProt (G0RYN9) Pfam (PF16906) Pfam (PF00467) | Chaetomium thermophilum | |
| 30 | EA (Le) | 60S ribosomal protein L32-like protein | polymer | 131 | 15096.0 | 1 | UniProt (G0S6V4) Pfam (PF01655) | Chaetomium thermophilum | |
| 31 | FA (Lf) | 60S ribosomal protein l33-like protein | polymer | 109 | 12330.3 | 1 | UniProt (G0SCL3) Pfam (PF01247) | Chaetomium thermophilum | |
| 32 | GA (Lh) | dolichyl-diphosphooligosaccharide--protein glycotransferase | polymer | 935 | 105169.2 | 1 | UniProt (G0S0D7) Pfam (PF00831) Pfam (PF02516) Pfam (PF21436) | Chaetomium thermophilum | |
| 33 | HA (Li) | 60S ribosomal protein L36 | polymer | 110 | 12784.1 | 1 | UniProt (G0SBN1) Pfam (PF01158) | Chaetomium thermophilum | |
| 34 | IA (Lj) | Ribosomal protein L37 | polymer | 95 | 10660.5 | 1 | UniProt (G0S101) Pfam (PF01907) | Chaetomium thermophilum | |
| 35 | JA (Cc) | Ribosomal RNA-processing protein 1 | polymer | 282 | 32128.6 | 1 | UniProt (G0S4M2) Pfam (PF05997) | Chaetomium thermophilum | |
| 36 | KA (Cd) | Brix domain-containing protein | polymer | 436 | 49471.9 | 1 | UniProt (G0S4S2) Pfam (PF04427) | Chaetomium thermophilum | |
| 37 | LA (Ce) | Protein MAK16 | polymer | 336 | 39464.9 | 1 | UniProt (G0SFD6) Pfam (PF01778) Pfam (PF04874) | Chaetomium thermophilum | |
| 38 | MA (Cf) | 60S ribosome biogenesis protein Rrp14 | polymer | 570 | 64465.4 | 1 | UniProt (G0S2I7) Pfam (PF15459) Pfam (PF04935) | Chaetomium thermophilum | |
| 39 | NA (Cy) | Ribosome production factor 2 homolog | polymer | 350 | 39927.3 | 1 | UniProt (G0SF80) Pfam (PF04427) | Chaetomium thermophilum | |
| 40 | OA (Cg) | Brix domain-containing protein | polymer | 478 | 54249.3 | 1 | UniProt (G0S732) Pfam (PF04427) | Chaetomium thermophilum | |
| 41 | PA (CP) | RNA methyltransferase nop2-like protein | polymer | 751 | 83658.3 | 1 | UniProt (G0SHQ0) Pfam (PF22458) Pfam (PF01189) | Chaetomium thermophilum | |
| 42 | QA (CG) | 60S ribosome subunit biogenesis protein NIP7 | polymer | 184 | 20686.0 | 1 | UniProt (G0S435) Pfam (PF03657) Pfam (PF17833) | Chaetomium thermophilum | |
| 43 | RA (Lq) | Ribosomal protein | polymer | 217 | 24055.3 | 1 | UniProt (G0S4Z9) Pfam (PF00687) | Chaetomium thermophilum | |
| 44 | SA (Cx) | Ribosome biogenesis regulatory protein | polymer | 202 | 22817.3 | 1 | UniProt (G0SCH6) Pfam (PF04939) | Chaetomium thermophilum | |
| 45 | TA (LJ) | Putative ribosomal protein | polymer | 173 | 20119.3 | 1 | UniProt (G0SHQ2) Pfam (PF00281) Pfam (PF00673) | Chaetomium thermophilum | |
| 46 | UA (LD) | 60S ribosomal protein l5-like protein | polymer | 304 | 35034.6 | 1 | UniProt (G0SEG2) Pfam (PF17144) Pfam (PF14204) | Chaetomium thermophilum | |
| 47 | VA (C4) | RNA (119-MER) | polymer | 119 | 38312.7 | 1 | Chaetomium thermophilum | ||
| 48 | WA (CX) | 60S ribosomal subunit-like protein | polymer | 203 | 22678.6 | 1 | UniProt (G0SGJ0) | Chaetomium thermophilum | |
| 49 | XA, YA, ZA (C1, Lj, Ce) | ZINC ION | non-polymer | 65.4 | 3 | Chemie (ZN) |
Sequence modifications
CE: 1 - 598 (UniProt: G0RYU9)
| PDB | External Database | Details |
|---|---|---|
| Lys 543 | - | insertion |
| Ser 544 | - | insertion |
| Phe 545 | - | insertion |
| Gly 546 | - | insertion |
| Phe 547 | - | insertion |
| Ser 548 | - | insertion |
| Thr 549 | - | insertion |
| Pro 550 | - | insertion |
| Pro 551 | - | insertion |
| Arg 552 | - | insertion |
| Val 553 | - | insertion |
| Asp 554 | - | insertion |
| Ile 555 | - | insertion |
| Thr 556 | - | insertion |
| Leu 557 | - | insertion |
| Ser 558 | - | insertion |
| Ala 559 | - | insertion |
| Ser 560 | - | insertion |
| Leu 561 | - | insertion |
| Ser 562 | - | insertion |
| Arg 563 | - | insertion |
| Asp 564 | - | insertion |
| Lys 565 | - | insertion |
| Lys 566 | - | insertion |
| Pro 567 | - | insertion |
| Gln 568 | - | insertion |
| Gly 569 | - | insertion |
| Arg 570 | - | insertion |
| Arg 571 | - | insertion |
| Ala 572 | - | insertion |
| Tyr 573 | - | insertion |
| Gly 574 | - | insertion |
| Ser 575 | - | insertion |
| Gln 576 | - | insertion |
| Pro 577 | - | insertion |
| Arg 578 | - | insertion |
| Gln 579 | - | insertion |
| Gly 580 | - | insertion |
| Gly 581 | - | insertion |
| Arg 582 | - | insertion |
| Tyr 583 | - | insertion |
| Lys 584 | - | insertion |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 49 |
| Total formula weight | 2865584.6 | |
| Non-Polymers* | Number of molecules | 3 |
| Total formula weight | 196.2 | |
| All* | Total formula weight | 2865780.8 |
