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SummaryStructural detailsExperimental detailsFunctional detailsSequence NeighborHistoryDownloads

8HFR

NPC-trapped pre-60S particle

This is a non-PDB format compatible entry.
Entity
Entity IDChain IDDescriptionTypeChain lengthFormula weightNumber of moleculesDB Name (Accession)Biological sourceDescriptive keywords
1h160S ribosomal protein L35-Apolymer12013942.61UniProt (P0CX84)
Pfam (PF00831)
In PDB		Saccharomyces cerevisiae S288CLarge ribosomal subunit protein uL29-A
2g260S ribosomal protein L34-Apolymer12113673.21UniProt (P87262)
Pfam (PF01199)
In PDB		Saccharomyces cerevisiae S288C
3b360S ribosomal protein L29polymer596691.91UniProt (P05747)
Pfam (PF01779)
In PDB		Saccharomyces cerevisiae S288CYL43
4B460S ribosomal protein L2-Apolymer25427463.61UniProt (P0CX45)
Pfam (PF00181)
Pfam (PF03947)
In PDB		Saccharomyces cerevisiae S288CL5,Large ribosomal subunit protein uL2-A,RP8,YL6
5V560S ribosomal protein L23-Apolymer13714494.01UniProt (P0CX41)
Pfam (PF00238)
In PDB		Saccharomyces cerevisiae S288CL17a,YL32
6O660S ribosomal protein L16-Apolymer19922247.21UniProt (P26784)
Pfam (PF00572)
In PDB		Saccharomyces cerevisiae S288CL13a,L21,Large ribosomal subunit protein uL13-A,RP22,YL15
7f760S ribosomal protein L33-Apolymer10712177.11UniProt (P05744)
Pfam (PF01247)
In PDB		Saccharomyces cerevisiae S288CL37,Large ribosomal subunit protein eL33-A,RP47,YL37
8F860S ribosomal protein L6-Apolymer17620000.61UniProt (Q02326)
Pfam (PF01159)
In PDB		Saccharomyces cerevisiae S288CL17,Large ribosomal subunit protein eL6-A,RP18,YL16
9v9Nucleolar GTP-binding protein 2polymer48655585.61UniProt (P53742)
Pfam (PF08153)
Pfam (PF01926)
In PDB		Saccharomyces cerevisiae S288C
10rANucleolar GTP-binding protein 1polymer64774531.21UniProt (Q02892)
Pfam (PF17835)
Pfam (PF06858)
Pfam (PF08155)
In PDB		Saccharomyces cerevisiae S288C
11tBRibosome biogenesis protein RLP24polymer19924027.71UniProt (Q07915)
Pfam (PF01246)
In PDB		Saccharomyces cerevisiae S288CRibosomal protein L24-like
12cC60S ribosomal protein L30polymer10511430.41UniProt (P14120)
Pfam (PF01248)
In PDB		Saccharomyces cerevisiae S288CL32,RP73,YL38
13CD60S ribosomal protein L3polymer38743850.81UniProt (P14126)
Pfam (PF00297)
In PDB		Saccharomyces cerevisiae S288CLarge ribosomal subunit protein uL3,Maintenance of killer protein 8,RP1,Trichodermin resistance protein,YL1
14yEEukaryotic translation initiation factor 6polymer24526476.61UniProt (Q12522)
Pfam (PF01912)
In PDB		Saccharomyces cerevisiae S288CeIF-6
15UF60S ribosomal protein L22-Apolymer12113711.41UniProt (P05749)
Pfam (PF01776)
In PDB		Saccharomyces cerevisiae S288CL1c,RP4,YL31
16dG60S ribosomal protein L31-Apolymer11312980.21UniProt (P0C2H8)
Pfam (PF01198)
In PDB		Saccharomyces cerevisiae S288CL34,YL28
17eH60S ribosomal protein L32polymer13014809.41UniProt (P38061)
Pfam (PF01655)
In PDB		Saccharomyces cerevisiae S288CLarge ribosomal subunit protein eL32
18xIShuttling pre-60S factor ECM1polymer21223934.31UniProt (P39715)
Pfam (PF09135)
In PDB		Saccharomyces cerevisiae S288CExtracellular mutant protein 1,Protein SIM1
19qJRibosome biogenesis protein ALB1polymer17519322.01UniProt (P47019)
Pfam (PF09135)
In PDB		Saccharomyces cerevisiae S288C
20DK, FR, BtmRNA transport regulator MTR2polymer18420802.53UniProt (P34232)
Pfam (PF10429)
In PDB		Saccharomyces cerevisiae S288C
21LL60S ribosomal protein L13-Apolymer19922604.21UniProt (Q12690)
Pfam (PF01294)
In PDB		Saccharomyces cerevisiae S288CLarge ribosomal subunit protein eL13-A
22KMYEAST 60S ribosomal protein L12-Apolymer16517850.61UniProt (P0CX53)
Pfam (PF03946)
Pfam (PF00298)
In PDB		Saccharomyces cerevisiae S288CL15,Large ribosomal subunit protein uL11-A,YL23
23AN, CW, EXmRNA export factor MEX67polymer59967417.53UniProt (Q99257)
Pfam (PF18444)
Pfam (PF22602)
Pfam (PF03943)
In PDB		Saccharomyces cerevisiae S288C
24DO60S ribosomal protein L4-Apolymer36239159.11UniProt (P10664)
Pfam (PF14374)
Pfam (PF00573)
In PDB		Saccharomyces cerevisiae S288CL2,Large ribosomal subunit protein uL4-A,RP2,YL2
25RP60S ribosomal protein L19-Apolymer18921762.31UniProt (P0CX82)
Pfam (PF01280)
In PDB		Saccharomyces cerevisiae S288CL23,RP15L,RP33,YL14
26MQ60S ribosomal protein L14-Apolymer13815195.11UniProt (P36105)
Pfam (PF00467)
Pfam (PF01929)
In PDB		Saccharomyces cerevisiae S288CLarge ribosomal subunit protein eL14-A
27mS60S ribosomal protein L42-Apolymer10612246.71UniProt (P0CX27)
Pfam (PF00935)
In PDB		Saccharomyces cerevisiae S288CL41,YL27,YP44
28pTProbable metalloprotease ARX1polymer59365290.31UniProt (Q03862)
In PDB		Saccharomyces cerevisiae S288CAssociated with ribosomal export complex protein 1
29YU60S ribosomal protein L26-Apolymer12714265.81UniProt (P05743)
Pfam (PF16906)
Pfam (PF00467)
In PDB		Saccharomyces cerevisiae S288CL33,Large ribosomal subunit protein uL24-A,YL33
30vV60S ribosomal export protein NMD3polymer51859167.01UniProt (P38861)
Pfam (PF04981)
Pfam (PF21193)
Pfam (PF21192)
In PDB		Saccharomyces cerevisiae S288CNonsense-mediated mRNA decay protein 3
31nY60S ribosomal protein L43-Apolymer9210113.01UniProt (P0CX25)
Pfam (PF01780)
In PDB		Saccharomyces cerevisiae S288CL37a,YL35
32SZ60S ribosomal protein L20-Apolymer17220478.91UniProt (P0CX23)
Pfam (PF01775)
In PDB		Saccharomyces cerevisiae S288CL18a,Large ribosomal subunit protein eL20-A
33ia60S ribosomal protein L36-Apolymer10011151.31UniProt (P05745)
Pfam (PF01158)
In PDB		Saccharomyces cerevisiae S288CL39,Large ribosomal subunit protein eL36-A,YL39
34Ib60S ribosomal protein L9-Apolymer19121605.11UniProt (P05738)
Pfam (PF00347)
In PDB		Saccharomyces cerevisiae S288CL8,Large ribosomal subunit protein uL6-A,RP24,YL11
35Xc60S ribosomal protein L25polymer14215787.61UniProt (P04456)
Pfam (PF03939)
Pfam (PF00276)
In PDB		Saccharomyces cerevisiae S288CRP16L,YL25,YP42'
36xdRibosome biogenesis protein NSA2polymer26129786.81UniProt (P40078)
Pfam (PF01201)
In PDB		Saccharomyces cerevisiae S288CNOP7-associated protein 2
371e25S ribosomal RNApolymer33961097493.91GenBank (NR_132207)Saccharomyces cerevisiae S288C
382f5S ribosomal RNApolymer12138951.11GenBank (1039023795)Saccharomyces cerevisiae S288C
39WgRibosome assembly factor MRT4polymer23627098.01UniProt (P33201)
Pfam (PF00466)
Pfam (PF17777)
In PDB		Saccharomyces cerevisiae S288CmRNA turnover protein 4
40jh60S ribosomal protein L37-Apolymer889877.41UniProt (P49166)
Pfam (PF01907)
In PDB		Saccharomyces cerevisiae S288CL43,Large ribosomal subunit protein eL37-A,YL35,YP55
41li60S ribosomal protein L39polymer516358.61UniProt (P04650)
Pfam (PF00832)
In PDB		Saccharomyces cerevisiae S288CL46,YL40
42Hj60S ribosomal protein L8-Apolymer25628175.81UniProt (P17076)
Pfam (PF01248)
In PDB		Saccharomyces cerevisiae S288CL4,L4-2,L7a-1,Large ribosomal subunit protein eL8-A,Maintenance of killer protein 7,RP6,YL5
43Qk60S ribosomal protein L18-Apolymer18620609.31UniProt (P0CX49)
Pfam (PF17135)
In PDB		Saccharomyces cerevisiae S288CLarge ribosomal subunit protein eL18-A,RP28
44Tl60S ribosomal protein L21-Apolymer16018279.31UniProt (Q02753)
Pfam (PF01157)
In PDB		Saccharomyces cerevisiae S288C
45smTranslation machinery-associated protein 16polymer17820883.11UniProt (Q08687)
Pfam (PF11176)
In PDB		Saccharomyces cerevisiae S288C
463n5.8S ribosomal RNApolymer15850682.91GenBank (1669301378)Saccharomyces cerevisiae S288C
47No60S ribosomal protein L15-Apolymer20424482.41UniProt (P05748)
Pfam (PF00827)
In PDB		Saccharomyces cerevisiae S288CL13,Large ribosomal subunit protein eL15-A,RP15R,YL10,YP18
48zpUPF0642 protein YBL028Cpolymer10612435.41UniProt (P38202)
Pfam (PF10338)
In PDB		Saccharomyces cerevisiae S288C
49Zq60S ribosomal protein L27-Apolymer13615568.41UniProt (P0C2H6)
Pfam (PF01777)
In PDB		Saccharomyces cerevisiae S288C
50kr60S ribosomal protein L38polymer788845.61UniProt (P49167)
Pfam (PF01781)
In PDB		Saccharomyces cerevisiae S288C
51AsYEAST 60S ribosomal protein L1-Apolymer21724524.81UniProt (P0CX43)
Pfam (PF00687)
In PDB		Saccharomyces cerevisiae S288CL10a,Large ribosomal subunit protein uL1-A
52Gu60S ribosomal protein L7-Apolymer24427686.31UniProt (P05737)
Pfam (PF08079)
Pfam (PF00327)
In PDB		Saccharomyces cerevisiae S288CL6,Large ribosomal subunit protein uL30-A,RP11,YL8
53Pv60S ribosomal protein L17-Apolymer18420589.51UniProt (P05740)
Pfam (PF00237)
In PDB		Saccharomyces cerevisiae S288CL20A,Large ribosomal subunit protein uL22-A,YL17
54aw60S ribosomal protein L28polymer14916761.71UniProt (P02406)
Pfam (PF00828)
In PDB		Saccharomyces cerevisiae S288CL27a,L29,RP44,RP62,YL24
55oxBud site selection protein 20polymer16618547.01UniProt (Q08004)
Pfam (PF12171)
In PDB		Saccharomyces cerevisiae S288C
56Jy60S ribosomal protein L11-Apolymer17419755.71UniProt (P0C0W9)
Pfam (PF00281)
Pfam (PF00673)
In PDB		Saccharomyces cerevisiae S288CL16,RP39,YL22
57Ez60S ribosomal protein L5polymer29733764.81UniProt (P26321)
Pfam (PF17144)
Pfam (PF14204)
In PDB		Saccharomyces cerevisiae S288CL1,L1a,Ribosomal 5S RNA-binding protein,YL3
581e, 2f, 3n, g2, No...MAGNESIUM IONnon-polymer24.3237Chemie (MG)
Sequence viewer
Contents of the asymmetric unit
PolymersNumber of chains61
Total formula weight2633844.2
Non-Polymers*Number of molecules237
Total formula weight5760.3
All*Total formula weight2639604.4
*Water molecules are not included.

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PDB entries from 2024-07-24

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