Loading
PDBj
MenuPDBj@FacebookPDBj@X(formerly Twitter)PDBj@BlueSkyPDBj@YouTubewwPDB FoundationwwPDBDonate
RCSB PDBPDBeBMRBAdv. SearchSearch help

8HFR

NPC-trapped pre-60S particle

This is a non-PDB format compatible entry.
Entity
Entity IDChain IDDescriptionTypeChain lengthFormula weightNumber of moleculesDB Name (Accession)Biological sourceDescriptive keywords
1A
(h1)
60S ribosomal protein L35-Apolymer12013942.61UniProt (P0CX84)
Pfam (PF00831)
Saccharomyces cerevisiae S288CLarge ribosomal subunit protein uL29-A
2B
(g2)
60S ribosomal protein L34-Apolymer12113673.21UniProt (P87262)
Pfam (PF01199)
Saccharomyces cerevisiae S288C
3C
(b3)
60S ribosomal protein L29polymer596691.91UniProt (P05747)
Pfam (PF01779)
Saccharomyces cerevisiae S288CYL43
4D
(B4)
60S ribosomal protein L2-Apolymer25427463.61UniProt (P0CX45)
Pfam (PF00181)
Pfam (PF03947)
Saccharomyces cerevisiae S288CL5,Large ribosomal subunit protein uL2-A,RP8,YL6
5E
(V5)
60S ribosomal protein L23-Apolymer13714494.01UniProt (P0CX41)
Pfam (PF00238)
Saccharomyces cerevisiae S288CL17a,YL32
6F
(O6)
60S ribosomal protein L16-Apolymer19922247.21UniProt (P26784)
Pfam (PF00572)
Saccharomyces cerevisiae S288CL13a,L21,Large ribosomal subunit protein uL13-A,RP22,YL15
7G
(f7)
60S ribosomal protein L33-Apolymer10712177.11UniProt (P05744)
Pfam (PF01247)
Saccharomyces cerevisiae S288CL37,Large ribosomal subunit protein eL33-A,RP47,YL37
8H
(F8)
60S ribosomal protein L6-Apolymer17620000.61UniProt (Q02326)
Pfam (PF01159)
Saccharomyces cerevisiae S288CL17,Large ribosomal subunit protein eL6-A,RP18,YL16
9I
(v9)
Nucleolar GTP-binding protein 2polymer48655585.61UniProt (P53742)
Pfam (PF08153)
Pfam (PF01926)
Saccharomyces cerevisiae S288C
10J
(rA)
Nucleolar GTP-binding protein 1polymer64774531.21UniProt (Q02892)
Pfam (PF17835)
Pfam (PF06858)
Pfam (PF08155)
Saccharomyces cerevisiae S288C
11K
(tB)
Ribosome biogenesis protein RLP24polymer19924027.71UniProt (Q07915)
Pfam (PF01246)
Saccharomyces cerevisiae S288CRibosomal protein L24-like
12L
(cC)
60S ribosomal protein L30polymer10511430.41UniProt (P14120)
Pfam (PF01248)
Saccharomyces cerevisiae S288CL32,RP73,YL38
13M
(CD)
60S ribosomal protein L3polymer38743850.81UniProt (P14126)
Pfam (PF00297)
Saccharomyces cerevisiae S288CLarge ribosomal subunit protein uL3,Maintenance of killer protein 8,RP1,Trichodermin resistance protein,YL1
14N
(yE)
Eukaryotic translation initiation factor 6polymer24526476.61UniProt (Q12522)
Pfam (PF01912)
Saccharomyces cerevisiae S288CeIF-6
15O
(UF)
60S ribosomal protein L22-Apolymer12113711.41UniProt (P05749)
Pfam (PF01776)
Saccharomyces cerevisiae S288CL1c,RP4,YL31
16P
(dG)
60S ribosomal protein L31-Apolymer11312980.21UniProt (P0C2H8)
Pfam (PF01198)
Saccharomyces cerevisiae S288CL34,YL28
17Q
(eH)
60S ribosomal protein L32polymer13014809.41UniProt (P38061)
Pfam (PF01655)
Saccharomyces cerevisiae S288CLarge ribosomal subunit protein eL32
18R
(xI)
Shuttling pre-60S factor ECM1polymer21223934.31UniProt (P39715)
Pfam (PF09135)
Saccharomyces cerevisiae S288CExtracellular mutant protein 1,Protein SIM1
19S
(qJ)
Ribosome biogenesis protein ALB1polymer17519322.01UniProt (P47019)
Pfam (PF09135)
Saccharomyces cerevisiae S288C
20AA, CB, T
(DK, FR, Bt)
mRNA transport regulator MTR2polymer18420802.53UniProt (P34232)
Pfam (PF10429)
Saccharomyces cerevisiae S288C
21U
(LL)
60S ribosomal protein L13-Apolymer19922604.21UniProt (Q12690)
Pfam (PF01294)
Saccharomyces cerevisiae S288CLarge ribosomal subunit protein eL13-A
22V
(KM)
YEAST 60S ribosomal protein L12-Apolymer16517850.61UniProt (P0CX53)
Pfam (PF03946)
Pfam (PF00298)
Saccharomyces cerevisiae S288CL15,Large ribosomal subunit protein uL11-A,YL23
23FA, GA, W
(AN, CW, EX)
mRNA export factor MEX67polymer59967417.53UniProt (Q99257)
Pfam (PF18444)
Pfam (PF22602)
Pfam (PF03943)
Saccharomyces cerevisiae S288C
24X
(DO)
60S ribosomal protein L4-Apolymer36239159.11UniProt (P10664)
Pfam (PF14374)
Pfam (PF00573)
Saccharomyces cerevisiae S288CL2,Large ribosomal subunit protein uL4-A,RP2,YL2
25Y
(RP)
60S ribosomal protein L19-Apolymer18921762.31UniProt (P0CX82)
Pfam (PF01280)
Saccharomyces cerevisiae S288CL23,RP15L,RP33,YL14
26Z
(MQ)
60S ribosomal protein L14-Apolymer13815195.11UniProt (P36105)
Pfam (PF00467)
Pfam (PF01929)
Saccharomyces cerevisiae S288CLarge ribosomal subunit protein eL14-A
27BA
(mS)
60S ribosomal protein L42-Apolymer10612246.71UniProt (P0CX27)
Pfam (PF00935)
Saccharomyces cerevisiae S288CL41,YL27,YP44
28CA
(pT)
Probable metalloprotease ARX1polymer59365290.31UniProt (Q03862)Saccharomyces cerevisiae S288CAssociated with ribosomal export complex protein 1
29DA
(YU)
60S ribosomal protein L26-Apolymer12714265.81UniProt (P05743)
Pfam (PF16906)
Pfam (PF00467)
Saccharomyces cerevisiae S288CL33,Large ribosomal subunit protein uL24-A,YL33
30EA
(vV)
60S ribosomal export protein NMD3polymer51859167.01UniProt (P38861)
Pfam (PF04981)
Pfam (PF21193)
Pfam (PF21192)
Saccharomyces cerevisiae S288CNonsense-mediated mRNA decay protein 3
31HA
(nY)
60S ribosomal protein L43-Apolymer9210113.01UniProt (P0CX25)
Pfam (PF01780)
Saccharomyces cerevisiae S288CL37a,YL35
32IA
(SZ)
60S ribosomal protein L20-Apolymer17220478.91UniProt (P0CX23)
Pfam (PF01775)
Saccharomyces cerevisiae S288CL18a,Large ribosomal subunit protein eL20-A
33JA
(ia)
60S ribosomal protein L36-Apolymer10011151.31UniProt (P05745)
Pfam (PF01158)
Saccharomyces cerevisiae S288CL39,Large ribosomal subunit protein eL36-A,YL39
34KA
(Ib)
60S ribosomal protein L9-Apolymer19121605.11UniProt (P05738)
Pfam (PF00347)
Saccharomyces cerevisiae S288CL8,Large ribosomal subunit protein uL6-A,RP24,YL11
35LA
(Xc)
60S ribosomal protein L25polymer14215787.61UniProt (P04456)
Pfam (PF03939)
Pfam (PF00276)
Saccharomyces cerevisiae S288CRP16L,YL25,YP42'
36MA
(xd)
Ribosome biogenesis protein NSA2polymer26129786.81UniProt (P40078)
Pfam (PF01201)
Saccharomyces cerevisiae S288CNOP7-associated protein 2
37NA
(1e)
25S ribosomal RNApolymer33961097493.91GenBank (NR_132207)Saccharomyces cerevisiae S288C
38OA
(2f)
5S ribosomal RNApolymer12138951.11GenBank (1039023795)Saccharomyces cerevisiae S288C
39PA
(Wg)
Ribosome assembly factor MRT4polymer23627098.01UniProt (P33201)
Pfam (PF00466)
Pfam (PF17777)
Saccharomyces cerevisiae S288CmRNA turnover protein 4
40QA
(jh)
60S ribosomal protein L37-Apolymer889877.41UniProt (P49166)
Pfam (PF01907)
Saccharomyces cerevisiae S288CL43,Large ribosomal subunit protein eL37-A,YL35,YP55
41RA
(li)
60S ribosomal protein L39polymer516358.61UniProt (P04650)
Pfam (PF00832)
Saccharomyces cerevisiae S288CL46,YL40
42SA
(Hj)
60S ribosomal protein L8-Apolymer25628175.81UniProt (P17076)
Pfam (PF01248)
Saccharomyces cerevisiae S288CL4,L4-2,L7a-1,Large ribosomal subunit protein eL8-A,Maintenance of killer protein 7,RP6,YL5
43TA
(Qk)
60S ribosomal protein L18-Apolymer18620609.31UniProt (P0CX49)
Pfam (PF17135)
Saccharomyces cerevisiae S288CLarge ribosomal subunit protein eL18-A,RP28
44UA
(Tl)
60S ribosomal protein L21-Apolymer16018279.31UniProt (Q02753)
Pfam (PF01157)
Saccharomyces cerevisiae S288C
45VA
(sm)
Translation machinery-associated protein 16polymer17820883.11UniProt (Q08687)
Pfam (PF11176)
Saccharomyces cerevisiae S288C
46WA
(3n)
5.8S ribosomal RNApolymer15850682.91GenBank (1669301378)Saccharomyces cerevisiae S288C
47XA
(No)
60S ribosomal protein L15-Apolymer20424482.41UniProt (P05748)
Pfam (PF00827)
Saccharomyces cerevisiae S288CL13,Large ribosomal subunit protein eL15-A,RP15R,YL10,YP18
48YA
(zp)
UPF0642 protein YBL028Cpolymer10612435.41UniProt (P38202)
Pfam (PF10338)
Saccharomyces cerevisiae S288C
49ZA
(Zq)
60S ribosomal protein L27-Apolymer13615568.41UniProt (P0C2H6)
Pfam (PF01777)
Saccharomyces cerevisiae S288C
50AB
(kr)
60S ribosomal protein L38polymer788845.61UniProt (P49167)
Pfam (PF01781)
Saccharomyces cerevisiae S288C
51BB
(As)
YEAST 60S ribosomal protein L1-Apolymer21724524.81UniProt (P0CX43)
Pfam (PF00687)
Saccharomyces cerevisiae S288CL10a,Large ribosomal subunit protein uL1-A
52DB
(Gu)
60S ribosomal protein L7-Apolymer24427686.31UniProt (P05737)
Pfam (PF08079)
Pfam (PF00327)
Saccharomyces cerevisiae S288CL6,Large ribosomal subunit protein uL30-A,RP11,YL8
53EB
(Pv)
60S ribosomal protein L17-Apolymer18420589.51UniProt (P05740)
Pfam (PF00237)
Saccharomyces cerevisiae S288CL20A,Large ribosomal subunit protein uL22-A,YL17
54FB
(aw)
60S ribosomal protein L28polymer14916761.71UniProt (P02406)
Pfam (PF00828)
Saccharomyces cerevisiae S288CL27a,L29,RP44,RP62,YL24
55GB
(ox)
Bud site selection protein 20polymer16618547.01UniProt (Q08004)
Pfam (PF12171)
Saccharomyces cerevisiae S288C
56HB
(Jy)
60S ribosomal protein L11-Apolymer17419755.71UniProt (P0C0W9)
Pfam (PF00281)
Pfam (PF00673)
Saccharomyces cerevisiae S288CL16,RP39,YL22
57IB
(Ez)
60S ribosomal protein L5polymer29733764.81UniProt (P26321)
Pfam (PF17144)
Pfam (PF14204)
Saccharomyces cerevisiae S288CL1,L1a,Ribosomal 5S RNA-binding protein,YL3
58AC, AD, AE, AF, AG...
(1e, 2f, 3n, g2, No...)
MAGNESIUM IONnon-polymer24.3237Chemie (MG)
Sequence viewer
Contents of the asymmetric unit
PolymersNumber of chains61
Total formula weight2633844.2
Non-Polymers*Number of molecules237
Total formula weight5760.3
All*Total formula weight2639604.4
*Water molecules are not included.

237423

PDB entries from 2025-06-11

PDB statisticsPDBj update infoContact PDBjnumon