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8H5T

Crystal structure of SARS-CoV-2 spike receptor-binding domain in complex with neutralizing nanobody Nb-015

Entity
Entity IDChain IDDescriptionTypeChain lengthFormula weightNumber of moleculesDB Name (Accession)Biological sourceDescriptive keywords
1A
(A)
Spike protein S1polymer21824501.61UniProt (P0DTC2)
Pfam (PF09408)
Severe acute respiratory syndrome coronavirus 2 (2019-nCoV SARS-CoV-2)
2B
(B)
Nanobody Nb-015polymer12714281.81Vicugna pacos
3C
(A)
2-acetamido-2-deoxy-beta-D-glucopyranosenon-polymer221.21Chemie (NAG)
4D, E
(A, B)
waterwater18.0146Chemie (HOH)
Sequence viewer
Contents of the asymmetric unit
PolymersNumber of chains2
Total formula weight38783.3
Non-Polymers*Number of molecules1
Total formula weight221.2
All*Total formula weight39004.6
*Water molecules are not included.

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PDB entries from 2025-06-11

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