8GKH
Structure of the Spizellomyces punctatus Fanzor (SpuFz) in complex with omega RNA and target DNA
Entity
Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
1 | N | DNA (5'-D(P*CP*GP*GP*TP*AP*CP*CP*CP*GP*GP*GP*CP*AP*TP*A)-3') | polymer | 15 | 4595.0 | 1 | synthetic construct | ||
2 | P | Maltodextrin-binding protein (Fragment),OrfB_Zn_ribbon domain-containing protein | polymer | 1032 | 118029.9 | 1 | UniProt (A0A0F8NYV9) UniProt (A0A0L0H5U9) Pfam (PF01547) UniProt (by SIFTS) (P0AEX9) In PDB | Methanosarcina mazei | |
3 | T | DNA (35-MER) | polymer | 35 | 10737.9 | 1 | synthetic construct | ||
4 | W | RNA (78-MER) | polymer | 78 | 25050.8 | 1 | Spizellomyces punctatus | ||
5 | P | MAGNESIUM ION | non-polymer | 24.3 | 2 | Chemie (MG) | |||
6 | P | ZINC ION | non-polymer | 65.4 | 1 | Chemie (ZN) | |||
7 | water | water | 18.0 | 3 | Chemie (HOH) |
Sequence modifications
P: -376 - -8 (UniProt: A0A0F8NYV9)
P: 2 - 638 (UniProt: A0A0L0H5U9)
PDB | External Database | Details |
---|---|---|
Met -393 | - | initiating methionine |
Lys -392 | - | expression tag |
Ser -391 | - | expression tag |
Ser -390 | - | expression tag |
His -389 | - | expression tag |
His -388 | - | expression tag |
His -387 | - | expression tag |
His -386 | - | expression tag |
His -385 | - | expression tag |
His -384 | - | expression tag |
His -383 | - | expression tag |
His -382 | - | expression tag |
His -381 | - | expression tag |
His -380 | - | expression tag |
Gly -379 | - | expression tag |
Ser -378 | - | expression tag |
Ser -377 | - | expression tag |
Ile -374 | Thr 3 | conflict |
Gly -9 | Asn 368 | conflict |
Glu -7 | - | linker |
Asn -6 | - | linker |
Leu -5 | - | linker |
Tyr -4 | - | linker |
Phe -3 | - | linker |
Gln -2 | - | linker |
Ser -1 | - | linker |
Asn 0 | - | linker |
Ala 1 | - | linker |
Sequence viewer
Contents of the asymmetric unit
Polymers | Number of chains | 4 |
Total formula weight | 158413.6 | |
Non-Polymers* | Number of molecules | 3 |
Total formula weight | 114.0 | |
All* | Total formula weight | 158527.7 |