8GCB
Structure of RNF125 in complex with a UbcH5b~Ub conjugate
Entity
Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
1 | A | Ubiquitin-conjugating enzyme E2 D2 | polymer | 152 | 17214.6 | 1 | UniProt (P62837) Pfam (PF00179) In PDB | Homo sapiens (human) | (E3-independent) E2 ubiquitin-conjugating enzyme D2,E2 ubiquitin-conjugating enzyme D2,Ubiquitin carrier protein D2,Ubiquitin-conjugating enzyme E2(17)KB 2,Ubiquitin-conjugating enzyme E2-17 kDa 2,Ubiquitin-protein ligase D2,p53-regulated ubiquitin-conjugating enzyme 1 |
2 | B | E3 ubiquitin-protein ligase RNF125 | polymer | 101 | 11345.2 | 1 | UniProt (Q96EQ8) Pfam (PF13923) Pfam (PF18574) In PDB | Homo sapiens (human) | RING finger protein 125,T-cell RING activation protein 1,TRAC-1 |
3 | B | ZINC ION | non-polymer | 65.4 | 3 | Chemie (ZN) |
Sequence modifications
A: 1 - 147 (UniProt: P62837)
B: 32 - 127 (UniProt: Q96EQ8)
PDB | External Database | Details |
---|---|---|
Gly -4 | - | expression tag |
Pro -3 | - | expression tag |
Leu -2 | - | expression tag |
Gly -1 | - | expression tag |
Ser 0 | - | expression tag |
Ser 21 | Cys 21 | engineered mutation |
Arg 22 | Ser 22 | engineered mutation |
Lys 85 | Cys 85 | engineered mutation |
Ser 107 | Cys 107 | engineered mutation |
Ser 111 | Cys 111 | engineered mutation |
PDB | External Database | Details |
---|---|---|
Gly 27 | - | expression tag |
Pro 28 | - | expression tag |
Leu 29 | - | expression tag |
Gly 30 | - | expression tag |
Ser 31 | - | expression tag |
Sequence viewer
Contents of the asymmetric unit
Polymers | Number of chains | 2 |
Total formula weight | 28559.9 | |
Non-Polymers* | Number of molecules | 3 |
Total formula weight | 196.2 | |
All* | Total formula weight | 28756.1 |